Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1739g00001 ATGAACTTCAGGAACTACGGTTATAATAACCCCACTTGGGATGCCATGCATGGGAAGACACCGGCGGCAAATGTTGGTTCTCTACTGAGACAGCCATCATCTGTATACTCCCTTACATTTGATGAGTTTCAGAGCACCATGGGTGGGGTTGGGAAGGAATTTGGGTCCATGAACATGGATGAACTCTTGAAGAACATTTGGACAGCTGAAGAGACTCAGGCCTTGACATTTTCAGCTGGTACAGGAGAAGGCCACAACCTTAACTCAATTAGTGGTGGTTTGCAAAGACAGGGTTCTTTGACATTGCCAAGGACTCTTAGTCAAAAAACAGTAGATGAGGTTTGGAAGGACTTGATCAAAGAAAGTAGTGGGGCCAATGATGGGAATGGCAATGGTGGTTCATCCATTCCTCAAAGGCAACCAACATTGGGAGAAATGACTTTAGAGGAGTTTTTGGTGAGAGCTGGGGTGGTGAGAGAAGATGTGCCTCAACAACAACAAATTGGAAAACCAAATAACAATGGATGGTTTGGTAACTTTCCTAGACCAAACAATAACAATGGCCTACTTCTTGGTTTCCATCAACCAAATAGAAGTAATGGGAATATGGGTGAGAGGGTGGTGGAGACCAACAATAACTTAGCTCCCAAACAACCTCCTCCTCTATCACTAAACTCAAACCACTCTCACCGACCAACACAACAGCCACCACTTTTTCCAAAGCCTGCAAATTTATCTTTTGCTGCTCCTATGCATTTGTTGAACAGTGCTGCACTTGCTAGCCCTGGCAGAAGAGGAGGGTTGATCGACCATTCATTGAATGTTGGACTGGTTGGTTTAGTCTCGGGTAATCCAGAGGCTTCTCCCTCAAGGAAAATATCATCAGATGTAATTACAAGAAGTAATGTAGACAACTCTCCACTGTCGCCAGTTCATTATTCAATCAACAGGGGAAGAAAATCTAGTGCTATAGAGAAAGTGGTTGAGAGAAGACAAAGGAGAATGATCAAAAATAGAGAATCAGCAGCCAGATCACGGGCTCGTAAGCAGGCCTACACTTTCGAACTAGAAGCTGAAGTTGCAAAACTAAAGGAAATAAACAGAGAATTGCAAAGAAAACAGGCAGAAATTAAGGAAATGCAGAAAAACAAGCAGGATTCGGACCCTGCAAGCCAGCCAAGGGTAAGTAAAATACAATGCTTGAGAAGGACACTTACAGGGCCATGGTAG 1230 0.4366 MNFRNYGYNNPTWDAMHGKTPAANVGSLLRQPSSVYSLTFDEFQSTMGGVGKEFGSMNMDELLKNIWTAEETQALTFSAGTGEGHNLNSISGGLQRQGSLTLPRTLSQKTVDEVWKDLIKESSGANDGNGNGGSSIPQRQPTLGEMTLEEFLVRAGVVREDVPQQQQIGKPNNNGWFGNFPRPNNNNGLLLGFHQPNRSNGNMGERVVETNNNLAPKQPPPLSLNSNHSHRPTQQPPLFPKPANLSFAAPMHLLNSAALASPGRRGGLIDHSLNVGLVGLVSGNPEASPSRKISSDVITRSNVDNSPLSPVHYSINRGRKSSAIEKVVERRQRRMIKNRESAARSRARKQAYTFELEAEVAKLKEINRELQRKQAEIKEMQKNKQDSDPASQPRVSKIQCLRRTLTGPW 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1739g00001 409 SUPERFAMILY Leucine zipper domain 330 379 IPR046347 GO:0003700|GO:0006355
Vium1739g00001 409 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 333 348 IPR004827 GO:0003700|GO:0006355
Vium1739g00001 409 SMART brlzneu 326 385 IPR004827 GO:0003700|GO:0006355
Vium1739g00001 409 MobiDBLite consensus disorder prediction 374 409 - -
Vium1739g00001 409 MobiDBLite consensus disorder prediction 124 142 - -
Vium1739g00001 409 MobiDBLite consensus disorder prediction 211 236 - -
Vium1739g00001 409 MobiDBLite consensus disorder prediction 121 142 - -
Vium1739g00001 409 MobiDBLite consensus disorder prediction 211 234 - -
Vium1739g00001 409 Gene3D - 328 386 - -
Vium1739g00001 409 Coils Coil 353 383 - -
Vium1739g00001 409 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 30 409 IPR043452 GO:0003700|GO:0045893
Vium1739g00001 409 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 5 328 385 - -
Vium1739g00001 409 CDD bZIP_plant_BZIP46 330 384 - -
Vium1739g00001 409 Pfam bZIP transcription factor 330 384 IPR004827 GO:0003700|GO:0006355
Vium1739g00001 409 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 328 379 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1739g00001 Vium-Chr1739 7257 10922 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1739g00001 16 409 bZIP Transcription Factor Family AT1G49720 47.722 4.73e-99 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium1739g00001 bZIP_1 4e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1739g00001 K14432 - gmx:100776600 587.415