Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1737g00017 ATGTCCTTCAATCAATCAAAGTCCGAGAAGAGCGACGCTGTGTACCGAAAATCCGGGCGATCCGCCAGCTTCAATCAGCAGCGAGGCTCCTCCGGCGGTGCGTACGGCAGGGGCGGAGGCGGCGGTGGCGGCGCCGGGCCTTCTCCGTCGCTCTCCTCTAACCGGAGTTTTAACAAGAAGTCTAATAACAATGCACAAGGTGGGCAATCTAGGGTAAACCCTGCACTGGTGAATTCGGCTGAGTCTAATAGTACTTATGCAGCCCGGACTGTTCCAAACGGTTCCCACTTACAGCCACAGATTCATGGAGTATCTGATGCGCCAGTTACTAATGCAACTGCCAAGCCATTTGAATCGTCAGCTGTGCAAAGGAGCACCAGAGCTGTTCCAAAAGCTCCTACCTCTCAACCTCCCTCCATGAGTTCTGATCCAGCCGCCCCTACAACTCCTGCTAAGGATGCATCTAAGTCGTTTCCTTTCCAATTTGGATCCATCAGTCCTGGCTTTATGAATGGGATGGCTATTCCTGCTCGCACAAGCTCAGCTCCTCCTAATATAGATGAGCAGAAGCGCGATCAGGCACGGCATGATTCTTTTAGACCTGCTCCCTCCGTGCCAACACCTCCTGTTCCAAAGCAGCAGGTAGTGAAGAAGGATACAGGTGTTAGTGACCAATCTAATACTGTGGAGACTCATACTGGGACTAGGGCAAAAAAGGATACTCAAGTGTCACCGTTACCCCCAGCAAGCCAGATGCAAAAGCCCTCTGTCATTCCTTTAACTGGAATTTCAATGGCAATGCCATACCACCAGTCACAGGCATCTGTACACTTTGGTGGTCCTAATCCACAGATTCAATCTCAAGGTATGTCATCAGCACCTCTTCAGATGCCCTTGCCAATGCCTTTGCCGATTGGAAGTGCCACACAAGTGCAGCAACCGGTTTTTGTTCCAAATCTTCAACCTCATCCTATTCATCCTCAAGGAATCATGCATCAAGGTCAAAGCATGGGTTTCACTCCTCAAATTGGCCCTCAGTTATCCCATCAGTTAGGCAACATGGGTATTGGAATTAGCCCACAATATCAACCGCAGCAAGGAGGAAAATTTGGTGCTCCTCGTAAAGCTACTCCTGTTAAGATAACCCATCCTGAGACACATGAAGAGCTAAGACTTGATAAAAGGGCAGATGCATATTCAGATGGTGGGTCATCTGGTGTGAGACCTCATTCTGGTATGGCTTCTCAATCTCAGCCTGCCCAGCCATTTGCAGCTTCTCATCCTATTAGTTACTATCCATCAAGCTCATATAGTACCAATTCTCTCTTTTATCCAACTGCTAGTTCTCTTCCATTAACAAGTAGCCAGATAACACCTAATTCCCAGCCACCCAGATTTAATTATGCTGTGAGCCATGGTCCGCAGAATGTTAGTTTTGTAAATTCATCATCTCATAGTTCCCTGCCTGTTAATAAAGCTGGCACTCCTATTACTGGAAATGCTGAACCACCTAATCCTGAATTTTCTCGTGATGTGCATAGTGCAATCTTATCTGCTCCGTCAGGAGTAACCTCTGTGTCAATTAAACCAAGTGGTGGATCTGGTGTTGTGGATTCGTTTGCCAATTCCAGTACCCAAAAGAGTGTATCTCCTAGTTCTGCATTAACATCTGGTGATGCTTTCTCTTCTGCACAACTAAAAGGGTCTGAAATAGCTGAAATATCTTCCCAGCAGTCTAAGTTATCCACTGATTCATCAGTCTTGAGCTCATTTCCAAATCTATCTTCTGCAAAGCCTGCATCAGCTTCCTTGTTGCTTTCTACATCTGCTGTCTCTGAAGATTCTGTTTCAGTTATACCTAATAATGAAGGCAGAAAGAAGGAATCTGTTAGTAGGTCAAATTCTTTGAAGGATAATCAGAAGAAAATACAGAAGAAAGGGCAATCACAGCATCAGGTTGCTGTGCAATCTGCTCCTGTGCTTAATGTGCCTTCCCAAGCTGTTGATGGTGGTATACCTGATGAAGTTTCTGAAACTACGGGAACTGGAACAAACGATTCTGCAGTAATTACGAGTGAAAATATCTCAACTGCAATGTCAGACTTTTTATCGGCTACTAGTGGCAGCATGCCTTATGCTGTTGAAATGAAAACTAATGATTCTACAGAAGTGTCAACTCGTGCTTCAGCTGAGGGATCTTTCATGGGGGTGGATGATTTTAACAATCTTAAGAGTGCTGAGCTAGATGAACTGTCACAACAGGATAAAGTATTGCAGTCAAATATCATGGAAGTAGTGGGTAAAACAGAAAACTTGTCGCTTGAAGGATGTAAACAAGATGTCAGTGTTGGTGGAACAGAATTAAGACAAACTAAACAGGGTGATGTAAAGCTAAACACTGAGGCTGTAGCCTTGAGGTCTGCGCAGCCAGGGCAGGATGGATCTACAAGTTGTAGTGCAGGAAGTGATGGGACGGCTGATGATACTTCTTTGGATAGGAAAGATGTTTCCTTGATCAGAAATGACAGTGTAATTAGTAATGAAGGTTTTTCTACAAATTCTGGCACATCAGATCAGCAGTCTGCTGATAGCATAGAAACATCTTCAAAACATTTGAAGGATGGTTCAGACAGTACTAGCAGTGGTGCAGTGTCTCTTCCAGCATCAGGTACCAAGGACAAATTGGTTTCGGAGCCTAGTAAGGGGAAACCTACATCAAAAAGTAAGAAGAAAAGAAAAGAAATTCTTCTGAAGGCTGATGCTGCTGGGTCAACATCTGATCTTTATAATGCATACAAGGGACCTGAGGAAAAGAAAGAATCTGTGATAAGTGCAGAGAAAACAGAAAGTGATTCTGCTTCTGGAAATTTAGAGCAGTTGCCTACCGAGGTTGCACAGTCAGATGATGTAGCAGACAAGCAATCTAAGCAGAGTAAAGCTGAACTTGATGATTGGGAGGATGCTGCTGACATGTCTACGCCAAAACTTGAAGTTTTAGATGAAACTGAACATTTTATTGAAGGAATTGCTGTTACTGGCAAAAAGTATTCTAGAGATTTCCTTTTGAAATTTTCAGAGCAATGCACGGACTTTCCTGAAGGGTTTGAAATCACGGCTGACATAGCTGAGGTTTTGATGAATCCTAATTTTAGCTCTCATGTAACTGAACGTGATTCACCTTCTAGTGGAAGAACTATTGATAGGTCAGGCAGCATGTCTCGTCGTGGGAGTGGTATTACTGAGGAAGACAAATGGAGTAAAGGTTCCAATGCATATCATTCTGGTATGCGTTTGGATGGTGTTGGTGGTAATGCAGGATTTCGTACCGGCCAAGGAGGCAATTTTGGTGTTTTAAGGAATCCACGCACACAGACACCTGTGCAATATACTGGAGGAATTCTTTCTGGTCCAATGCAATCCATGGTAAATCAGGGAGGAATGCAAAGAAATAGCCCTGATGGAGAAAGGTGGCAGCGTGCTACAAACTTCCAGCAGAGGGGTTTGATTCCATCTCCTCAAACTCCTTTACAGATGATGCACAAAGCTGAGAAAAAGTATGAGGTGGGTAAAGTGACGGATGAGGAAGAGGCAAAGCAGAGGCAGTTGAAGGGCATATTAAATAAATTAACTCCTCAGAATTTTGAGAAGCTTTTTGATCAGGTCAGAGCAGTTAATATTGACAATGTTGTCACTCTCAATGGTGTCATCTCACAAATCTTTGAGAAGGCCTTGATGGAGCCTACCTTCTGTGAAATGTATGCCAATTTCTGTTTTCATCTGGCTGTTGCATTGCCCGATCTCAGTCAAGACAATGAAAAGATAACTTTTAAGAGACTATTGTTAAACAAGTGCCAAGAAGAATTTGAAAGGGGTGAAAGAGAGCAAGAAGAAGCTAACAAGGCTGATGAAGGTGAGGTCAAGCTGTCTAATGAGGAAAGAGAAGAAAAACGAACCAAGGCAAGGAGACGTATGTTGGGTAATATTAGATTGATTGGAGAACTATATAAGAAGAAAATGTTGACAGAGAGGATAATGCATTCATGCATCAAGAAGCTATTGGGTCAGTATCAGGATCCAGATGAAGAAGATATTGAAGCTTTGTGCAAACTGATGAGTACGATTGGGGAGATGATTGACCATCCCAAAGCAAAAGAACATATGGATGCATATTTTGAAATGATGAGATCACTGTCAAACAACATGAATTTATCTTCTAGGGTGAGGTTCATGCTGAAGGATGTAATTGATTTGAGAAAGAATAAATGGCAGCAAAGAAGAAAAGTTGAAGGTCCAAAGAAGATTGAGGAGGTTCATAGAGATGCTTCTCAAGAGAGGATGGCCCAAGCTGGTAGGTTGGGTCGTGGTCCAGGCAACAATCCACCTAGAAGAATGCCTATGGATTTTGGTCCAAGAGGGTCATCTATGTTATCTCCTAATGCTCAGATGGGTGGACTTCGTGGATTGCCTTCTCAAGCTCGTGGGTATGGTTCCCAGGATGCTCGTATTGATGAACGGCAAACTTATGAGGCTAGGACATTGTCAGTTCCCTTACCACAAAGACCTTTGGGTGATGAATCAATAACCTTGGGACCAATGGGTGGTCTTGCGAGAGGAATGTCCATTAGAGGTCCACCTGCTGTTTCAAGTTCAACCGGTCTTAATGGTTATAATAATTTTTCGGAGCGCACTTCATACAGCTCTAGGGATGATCCTGCATCAAGATACGCTCCAGATAGATTTTCTGGTTCTACTTATGATCAATCTAGTGTTCAAGATCATAATGTGAATTATGCAAACAGGGACATGAGAATTGCAAATAGGTTTGCTGAAAAACCTGTTGTAACTTCGCCACCTGCCAGAACACAAGGGACAGCAGTCTCCCAAAATATTACCCAGGATCGATTACAGGACATGTCCATGTTAGCAATCAGAGAATACTACAGTGCGAGGGATGTGAATGAAGTTGTTCTATGTATCAAAGATCTGAACTCTCCAAGCTTTCATGCTTCCATGGTTTCTATCTGGGTCACAGACTCTTTCGAGAGAAAGGACACCGAGAGAGATCTTTTGGCCCAGCTGCTTGTCAAGCTTGTGAAATCTCAGGATGGACCCTTGGGTCAAGCCCAGCTCATCAAAGGGTTTGAATCTGTTCTTAGTACTTTGGAAGATGCGGTTAATGATGCCCCCAAAGCACCGGAGTTTCTTGGCCGTGTTTTTGCCAAAGCTATAACAGAGCATGTAGTCTCTTTGAACGAGATTGGGCATTTAATACATGAGGGTGGAGAGTTACCGGGGAGCCTATTAGAAGGTGGGCTTGCAGCTGATGTTCTTGGAAGCATCTTGGAGGCAATAAAAATGGATAAGGGTGATGCTGTTTTGAGTGAGATCTGTGCAAGCTCCAACTTGCGGTTGGAGAGCTTCCGGCCGCCGGAACCTCTTACATCAAGGAAGTTAGAAAAATTTATTTAG 5469 0.4377 MSFNQSKSEKSDAVYRKSGRSASFNQQRGSSGGAYGRGGGGGGGAGPSPSLSSNRSFNKKSNNNAQGGQSRVNPALVNSAESNSTYAARTVPNGSHLQPQIHGVSDAPVTNATAKPFESSAVQRSTRAVPKAPTSQPPSMSSDPAAPTTPAKDASKSFPFQFGSISPGFMNGMAIPARTSSAPPNIDEQKRDQARHDSFRPAPSVPTPPVPKQQVVKKDTGVSDQSNTVETHTGTRAKKDTQVSPLPPASQMQKPSVIPLTGISMAMPYHQSQASVHFGGPNPQIQSQGMSSAPLQMPLPMPLPIGSATQVQQPVFVPNLQPHPIHPQGIMHQGQSMGFTPQIGPQLSHQLGNMGIGISPQYQPQQGGKFGAPRKATPVKITHPETHEELRLDKRADAYSDGGSSGVRPHSGMASQSQPAQPFAASHPISYYPSSSYSTNSLFYPTASSLPLTSSQITPNSQPPRFNYAVSHGPQNVSFVNSSSHSSLPVNKAGTPITGNAEPPNPEFSRDVHSAILSAPSGVTSVSIKPSGGSGVVDSFANSSTQKSVSPSSALTSGDAFSSAQLKGSEIAEISSQQSKLSTDSSVLSSFPNLSSAKPASASLLLSTSAVSEDSVSVIPNNEGRKKESVSRSNSLKDNQKKIQKKGQSQHQVAVQSAPVLNVPSQAVDGGIPDEVSETTGTGTNDSAVITSENISTAMSDFLSATSGSMPYAVEMKTNDSTEVSTRASAEGSFMGVDDFNNLKSAELDELSQQDKVLQSNIMEVVGKTENLSLEGCKQDVSVGGTELRQTKQGDVKLNTEAVALRSAQPGQDGSTSCSAGSDGTADDTSLDRKDVSLIRNDSVISNEGFSTNSGTSDQQSADSIETSSKHLKDGSDSTSSGAVSLPASGTKDKLVSEPSKGKPTSKSKKKRKEILLKADAAGSTSDLYNAYKGPEEKKESVISAEKTESDSASGNLEQLPTEVAQSDDVADKQSKQSKAELDDWEDAADMSTPKLEVLDETEHFIEGIAVTGKKYSRDFLLKFSEQCTDFPEGFEITADIAEVLMNPNFSSHVTERDSPSSGRTIDRSGSMSRRGSGITEEDKWSKGSNAYHSGMRLDGVGGNAGFRTGQGGNFGVLRNPRTQTPVQYTGGILSGPMQSMVNQGGMQRNSPDGERWQRATNFQQRGLIPSPQTPLQMMHKAEKKYEVGKVTDEEEAKQRQLKGILNKLTPQNFEKLFDQVRAVNIDNVVTLNGVISQIFEKALMEPTFCEMYANFCFHLAVALPDLSQDNEKITFKRLLLNKCQEEFERGEREQEEANKADEGEVKLSNEEREEKRTKARRRMLGNIRLIGELYKKKMLTERIMHSCIKKLLGQYQDPDEEDIEALCKLMSTIGEMIDHPKAKEHMDAYFEMMRSLSNNMNLSSRVRFMLKDVIDLRKNKWQQRRKVEGPKKIEEVHRDASQERMAQAGRLGRGPGNNPPRRMPMDFGPRGSSMLSPNAQMGGLRGLPSQARGYGSQDARIDERQTYEARTLSVPLPQRPLGDESITLGPMGGLARGMSIRGPPAVSSSTGLNGYNNFSERTSYSSRDDPASRYAPDRFSGSTYDQSSVQDHNVNYANRDMRIANRFAEKPVVTSPPARTQGTAVSQNITQDRLQDMSMLAIREYYSARDVNEVVLCIKDLNSPSFHASMVSIWVTDSFERKDTERDLLAQLLVKLVKSQDGPLGQAQLIKGFESVLSTLEDAVNDAPKAPEFLGRVFAKAITEHVVSLNEIGHLIHEGGELPGSLLEGGLAADVLGSILEAIKMDKGDAVLSEICASSNLRLESFRPPEPLTSRKLEKFI 1822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1737g00017 1822 SMART ma3_7 1635 1749 IPR003891 -
Vium1737g00017 1822 MobiDBLite consensus disorder prediction 481 508 - -
Vium1737g00017 1822 SUPERFAMILY ARM repeat 1193 1423 IPR016024 -
Vium1737g00017 1822 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 357 1822 IPR045208 GO:0003743
Vium1737g00017 1822 MobiDBLite consensus disorder prediction 47 148 - -
Vium1737g00017 1822 MobiDBLite consensus disorder prediction 664 687 - -
Vium1737g00017 1822 MobiDBLite consensus disorder prediction 218 254 - -
Vium1737g00017 1822 MobiDBLite consensus disorder prediction 1052 1076 - -
Vium1737g00017 1822 MobiDBLite consensus disorder prediction 397 421 - -
Vium1737g00017 1822 Gene3D - 1199 1434 - -
Vium1737g00017 1822 MobiDBLite consensus disorder prediction 932 946 - -
Vium1737g00017 1822 FunFam Eukaryotic translation initiation factor 4G 1199 1434 - -
Vium1737g00017 1822 ProSiteProfiles MI domain profile. 1634 1758 IPR003891 -
Vium1737g00017 1822 Pfam MIF4G domain 1199 1421 IPR003890 GO:0003723|GO:0005515
Vium1737g00017 1822 MobiDBLite consensus disorder prediction 1426 1466 - -
Vium1737g00017 1822 Gene3D - 1626 1822 - -
Vium1737g00017 1822 MobiDBLite consensus disorder prediction 926 986 - -
Vium1737g00017 1822 MobiDBLite consensus disorder prediction 840 866 - -
Vium1737g00017 1822 MobiDBLite consensus disorder prediction 615 652 - -
Vium1737g00017 1822 MobiDBLite consensus disorder prediction 947 963 - -
Vium1737g00017 1822 MobiDBLite consensus disorder prediction 1 254 - -
Vium1737g00017 1822 MobiDBLite consensus disorder prediction 806 826 - -
Vium1737g00017 1822 MobiDBLite consensus disorder prediction 1291 1319 - -
Vium1737g00017 1822 MobiDBLite consensus disorder prediction 1561 1592 - -
Vium1737g00017 1822 MobiDBLite consensus disorder prediction 1426 1445 - -
Vium1737g00017 1822 MobiDBLite consensus disorder prediction 18 32 - -
Vium1737g00017 1822 FunFam Eukaryotic translation initiation factor 4G 1628 1821 - -
Vium1737g00017 1822 Coils Coil 1281 1301 - -
Vium1737g00017 1822 MobiDBLite consensus disorder prediction 625 645 - -
Vium1737g00017 1822 Pfam MA3 domain 1640 1747 IPR003891 -
Vium1737g00017 1822 SMART if4_15 1199 1421 IPR003890 GO:0003723|GO:0005515
Vium1737g00017 1822 MobiDBLite consensus disorder prediction 1052 1090 - -
Vium1737g00017 1822 MobiDBLite consensus disorder prediction 806 913 - -
Vium1737g00017 1822 MobiDBLite consensus disorder prediction 969 986 - -
Vium1737g00017 1822 SUPERFAMILY ARM repeat 1629 1819 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1737g00017 Vium-Chr1737 301758 310942 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1737g00017 1 1821 Eukaryotic Initiation Factors Gene Family AT3G60240 44.742 0.0 1276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1737g00017 K03260 - gmx:100796636 2803.85