Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1737g00016 ATGTCCTTCAATCAATCAAAGTCCGAGAAGAGCGACGCTGTGTACCGAAAATCCGGGCGATCCGCCAGCTTCAATCAGCAGCGAGGCTCCTCCGGCGGTGCGTACGGCAGGGGCGGAGGCGGCGGTGGCGGCGCCGGGCCTTCTCCGTCGCTCTCCTCTAACCGGAGTTTTAACAAGAAGTCTAATAACAATGCACAAGGTGGGCAATCTAGGGTAAACCCTGCACTGGTGAATTCGGCTGAGTCTAATAGTACTTATGCAGCCCGGACTGTTCCAAACGGTTCCCACTTACAGCCACAGATTCATGGAGTATCTGATGCGCCAGTTACTAATGCAACTGCCAAGCCATTTGAATCGTCAGCTGTGCAAAGGAGCACCAGAGCTGTTCCAAAAGCTCCTACCTCTCAACCTCCCTCCATGAGTTCTGATCCAGCCGCCCCTACAACTCCTGCTAAGGCAGATGCATCTAAGTCGTTTCCTTTCCAATTTGGATCCATCAGTCCTGGCTTTATGAATGGGATGGCTATTCCTGCTCGCACAAGCTCAGCTCCTCCTAATATAGATGAGCAGAAGCGCGATCAGGCACGGCATGATTCTTTTAGACCTGCTCCCTCCGTGCCAACACCTCCTGTTCCAAAGCAGCAGGTAGTGAAGAAGGATACAGGTGTTAGTGACCAATCTAATACTGTGGAGACTCATACTGGGACTAGGGCAAAAAAGGATACTCAAGTGTCACCGTTACCCCCAGCAAGCCAGATGCAAAAGCCCTCTGTCATTCCTTTAACTGGAATTTCAATGGCAATGCCATACCACCAGTCACAGGCATCTGTACACTTTGGTGGTCCTAATCCACAGATTCAATCTCAAGGTATGTCATCAGCACCTCTTCAGATGCCCTTGCCAATGCCTTTGCCGATTGGAAGTGCCACACAAGTGCAGCAACCGGTTTTTGTTCCAAATCTTCAACCTCATCCTATTCATCCTCAAGGAATCATGCATCAAGGTCAAAGCATGGGTTTCACTCCTCAAATTGGCCCTCAGTTATCCCATCAGTTAGGCAACATGGGTATTGGAATTAGCCCACAATATCAACCGCAGCAAGGAGGAAAATTTGGTGCTCCTCGTAAAGCTACTCCTGTTAAGATAACCCATCCTGAGACACATGAAGAGCTAAGACTTGATAAAAGGGCAGATGCATATTCAGATGGTGGGTCATCTGGTGTGAGACCTCATTCTGGTATGGCTTCTCAATCTCAGCCTGCCCAGCCATTTGCAGCTTCTCATCCTATTAGTTACTATCCATCAAGCTCATATAGTACCAATTCTCTCTTTTATCCAACTGCTAGTTCTCTTCCATTAACAAGTAGCCAGATAACACCTAATTCCCAGCCACCCAGATTTAATTATGCTGTGAGCCATGGTCCGCAGAATGTTAGTTTTGTAAATTCATCATCTCATAGTTCCCTGCCTGTTAATAAAGCTGGCACTCCTATTACTGGAAATGCTGAACCACCTAATCCTGAATTTTCTCGTGATGTGCATAGTGCAATCTTATCTGCTCCGTCAGGAGTAACCTCTGTGTCAATTAAACCAAGTGGTGGATCTGGTGTTGTGGATTCGTTTGCCAATTCCAGTACCCAAAAGAGTGTATCTCCTAGTTCTGCATTAACATCTGGTGATGCTTTCTCTTCTGCACAACTAAAAGGGTCTGAAATAGCTGAAATATCTTCCCAGCAGTCTAAGTTATCCACTGATTCATCAGTCTTGAGCTCATTTCCAAATCTATCTTCTGCAAAGCCTGCATCAGCTTCCTTGTTGCTTTCTACATCTGCTGTCTCTGAAGATTCTGTTTCAGTTATACCTAATAATGAAGGCAGAAAGAAGGAATCTGTTAGTAGGTCAAATTCTTTGAAGGATAATCAGAAGAAAATACAGAAGAAAGGGCAATCACAGCATCAGGTTGCTGTGCAATCTGCTCCTGTGCTTAATGTGCCTTCCCAAGCTGTTGATGGTGGTATACCTGATGAAGTTTCTGAAACTACGGGAACTGGAACAAACGATTCTGCAGTAATTACGAGTGAAAATATCTCAACTGCAATGTCAGACTTTTTATCGGCTACTAGTGGCAGCATGCCTTATGCTGTTGAAATGAAAACTAATGATTCTACAGAAGTGTCAACTCGTGCTTCAGCTGAGGGATCTTTCATGGGGGTGGATGATTTTAACAATCTTAAGAGTGCTGAGCTAGATGAACTGTCACAACAGGATAAAGTATTGCAGTCAAATATCATGGAAGTAGTGGGTAAAACAGAAAACTTGTCGCTTGAAGGATGTAAACAAGATGTCAGTGTTGGTGGAACAGAATTAAGACAAACTAAACAGGGTGATGTAAAGCTAAACACTGAGGCTGTAGCCTTGAGGTCTGCGCAGCCAGGGCAGGATGGATCTACAAGTTGTAGTGCAGGAAGTGATGGGACGGCTGATGATACTTCTTTGGATAGGAAAGATGTTTCCTTGATCAGAAATGACAGTGTAATTAGTAATGAAGGTTTTTCTACAAATTCTGGCACATCAGATCAGCAGTCTGCTGATAGCATAGAAACATCTTCAAAACATTTGAAGGATGGTTCAGACAGTACTAGCAGTGGTGCAGTGTCTCTTCCAGCATCAGGTACCAAGGACAAATTGGTTTCGGAGCCTAGTAAGGGGAAACCTACATCAAAAAGTAAGAAGAAAAGAAAAGAAATTCTTCTGAAGGCTGATGCTGCTGGGTCAACATCTGATCTTTATAATGCATACAAGGGACCTGAGGAAAAGAAAGAATCTGTGATAAGTGCAGAGAAAACAGAAAGTGATTCTGCTTCTGGAAATTTAGAGCAGTTGCCTACCGAGGTTGCACAGTCAGATGATGTAGCAGACAAGCAATCTAAGCAGAGTAAAGCTGAACTTGATGATTGGGAGGATGCTGCTGACATGTCTACGCCAAAACTTGAAGTTTTAGATGAAACTGAACATTTTATTGAAGGAATTGCTGTTACTGGCAAAAAGTATTCTAGAGATTTCCTTTTGAAATTTTCAGAGCAATGCACGGACTTTCCTGAAGGGTTTGAAATCACGGCTGACATAGCTGAGGTTTTGATGAATCCTAATTTTAGCTCTCATGTAACTGAACGTGATTCACCTTCTAGTGGAAGAACTATTGATAGGTCAGGCAGCATGTCTCGTCGTGGGAGTGGTATTACTGAGGAAGACAAATGGAGTAAAGGTTCCAATGCATATCATTCTGGTATGCGTTTGGATGGTGTTGGTGGTAATGCAGGATTTCGTACCGGCCAAGGAGGCAATTTTGGTGTTTTAAGGAATCCACGCACACAGACACCTGTGCAATATACTGGAGGAATTCTTTCTGGTCCAATGCAATCCATGGTAAATCAGGGAGGAATGCAAAGAAATAGCCCTGATGGAGAAAGGTGGCAGCGTGCTACAAACTTCCAGCAGAGGGGTTTGATTCCATCTCCTCAAACTCCTTTACAGATGATGCACAAAGCTGAGAAAAAGTATGAGGTGGGTAAAGTGACGGATGAGGAAGAGGCAAAGCAGAGGCAGTTGAAGGGCATATTAAATAAATTAACTCCTCAGAATTTTGAGAAGCTTTTTGATCAGGTCAGAGCAGTTAATATTGACAATGTTGTCACTCTCAATGGTGTCATCTCACAAATCTTTGAGAAGGCCTTGATGGAGCCTACCTTCTGTGAAATGTATGCCAATTTCTGTTTTCATCTGGCTGTTGCATTGCCCGATCTCAGTCAAGACAATGAAAAGATAACTTTTAAGAGACTATTGTTAAACAAGTGCCAAGAAGAATTTGAAAGGGGTGAAAGAGAGCAAGAAGAAGCTAACAAGGCTGATGAAGGTGAGGTCAAGCTGTCTAATGAGGAAAGAGAAGAAAAACGAACCAAGGCAAGGAGACGTATGTTGGGTAATATTAGATTGATTGGAGAACTATATAAGAAGAAAATGTTGACAGAGAGGATAATGCATTCATGCATCAAGAAGCTATTGGGTCAGTATCAGGATCCAGATGAAGAAGATATTGAAGCTTTGTGCAAACTGATGAGTACGATTGGGGAGATGATTGACCATCCCAAAGCAAAAGAACATATGGATGCATATTTTGAAATGATGAGATCACTGTCAAACAACATGAATTTATCTTCTAGGGTGAGGTTCATGCTGAAGGATGTAATTGATTTGAGAAAGAATAAATGGCAGCAAAGAAGAAAAGTTGAAGGTCCAAAGAAGATTGAGGAGGTTCATAGAGATGCTTCTCAAGAGAGGATGGCCCAAGCTGGTAGGTTGGGTCGTGGTCCAGGCAACAATCCACCTAGAAGAATGCCTATGGATTTTGGTCCAAGAGGGTCATCTATGTTATCTCCTAATGCTCAGATGGGTGGACTTCGTGGATTGCCTTCTCAAGCTCGTGGGTATGGTTCCCAGGATGCTCGTATTGATGAACGGCAAACTTATGAGGCTAGGACATTGTCAGTTCCCTTACCACAAAGACCTTTGGGTGATGAATCAATAACCTTGGGACCAATGGGTGGTCTTGCGAGAGGAATGTCCATTAGAGGTCCACCTGCTGTTTCAAGTTCAACCGGTCTTAATGGTTATAATAATTTTTCGGAGCGCACTTCATACAGCTCTAGGGATGATCCTGCATCAAGATACGCTCCAGATAGATTTTCTGGTTCTACTTATGATCAATCTAGTGTTCAAGATCATAATGTGAATTATGCAAACAGGGACATGAGAATTGCAAATAGGTTTGCTGAAAAACCTGTTGTAACTTCGCCACCTGCCAGAACACAAGGGACAGCAGTCTCCCAAAATATTACCCAGGATCGATTACAGGACATGTCCATGTTAGCAATCAGAGAATACTACAGTGCGAGGGATGTGAATGAAGTTGTTCTATGTATCAAAGATCTGAACTCTCCAAGCTTTCATGCTTCCATGGTTTCTATCTGGGTCACAGACTCTTTCGAGAGAAAGGACACCGAGAGAGATCTTTTGGCCCAGCTGCTTGTCAAGCTTGTGAAATCTCAGGATGGACCCTTGGGTCAAGCCCAGCTCATCAAAGGGTTTGAATCTGTTCTTAGTACTTTGGAAGATGCGGTTAATGATGCCCCCAAAGCACCGGAGTTTCTTGGCCGTGTTTTTGCCAAAGCTATAACAGAGCATGTAGTCTCTTTGAACGAGATTGGGCATTTAATACATGAGGGTGGAGAGTTACCGGGGAGCCTATTAGAAGGTGGGCTTGCAGCTGATGTTCTTGGAAGCATCTTGGAGGCAATAAAAATGGATAAGGGTGATGCTGTTTTGAGTGAGATCTGTGCAAGCTCCAACTTGCGGTTGGAGAGCTTCCGGCCGCCGGAACCTCTTACATCAAGGAAGTTAGAAAAATTTATTTAG 5472 0.4379 MSFNQSKSEKSDAVYRKSGRSASFNQQRGSSGGAYGRGGGGGGGAGPSPSLSSNRSFNKKSNNNAQGGQSRVNPALVNSAESNSTYAARTVPNGSHLQPQIHGVSDAPVTNATAKPFESSAVQRSTRAVPKAPTSQPPSMSSDPAAPTTPAKADASKSFPFQFGSISPGFMNGMAIPARTSSAPPNIDEQKRDQARHDSFRPAPSVPTPPVPKQQVVKKDTGVSDQSNTVETHTGTRAKKDTQVSPLPPASQMQKPSVIPLTGISMAMPYHQSQASVHFGGPNPQIQSQGMSSAPLQMPLPMPLPIGSATQVQQPVFVPNLQPHPIHPQGIMHQGQSMGFTPQIGPQLSHQLGNMGIGISPQYQPQQGGKFGAPRKATPVKITHPETHEELRLDKRADAYSDGGSSGVRPHSGMASQSQPAQPFAASHPISYYPSSSYSTNSLFYPTASSLPLTSSQITPNSQPPRFNYAVSHGPQNVSFVNSSSHSSLPVNKAGTPITGNAEPPNPEFSRDVHSAILSAPSGVTSVSIKPSGGSGVVDSFANSSTQKSVSPSSALTSGDAFSSAQLKGSEIAEISSQQSKLSTDSSVLSSFPNLSSAKPASASLLLSTSAVSEDSVSVIPNNEGRKKESVSRSNSLKDNQKKIQKKGQSQHQVAVQSAPVLNVPSQAVDGGIPDEVSETTGTGTNDSAVITSENISTAMSDFLSATSGSMPYAVEMKTNDSTEVSTRASAEGSFMGVDDFNNLKSAELDELSQQDKVLQSNIMEVVGKTENLSLEGCKQDVSVGGTELRQTKQGDVKLNTEAVALRSAQPGQDGSTSCSAGSDGTADDTSLDRKDVSLIRNDSVISNEGFSTNSGTSDQQSADSIETSSKHLKDGSDSTSSGAVSLPASGTKDKLVSEPSKGKPTSKSKKKRKEILLKADAAGSTSDLYNAYKGPEEKKESVISAEKTESDSASGNLEQLPTEVAQSDDVADKQSKQSKAELDDWEDAADMSTPKLEVLDETEHFIEGIAVTGKKYSRDFLLKFSEQCTDFPEGFEITADIAEVLMNPNFSSHVTERDSPSSGRTIDRSGSMSRRGSGITEEDKWSKGSNAYHSGMRLDGVGGNAGFRTGQGGNFGVLRNPRTQTPVQYTGGILSGPMQSMVNQGGMQRNSPDGERWQRATNFQQRGLIPSPQTPLQMMHKAEKKYEVGKVTDEEEAKQRQLKGILNKLTPQNFEKLFDQVRAVNIDNVVTLNGVISQIFEKALMEPTFCEMYANFCFHLAVALPDLSQDNEKITFKRLLLNKCQEEFERGEREQEEANKADEGEVKLSNEEREEKRTKARRRMLGNIRLIGELYKKKMLTERIMHSCIKKLLGQYQDPDEEDIEALCKLMSTIGEMIDHPKAKEHMDAYFEMMRSLSNNMNLSSRVRFMLKDVIDLRKNKWQQRRKVEGPKKIEEVHRDASQERMAQAGRLGRGPGNNPPRRMPMDFGPRGSSMLSPNAQMGGLRGLPSQARGYGSQDARIDERQTYEARTLSVPLPQRPLGDESITLGPMGGLARGMSIRGPPAVSSSTGLNGYNNFSERTSYSSRDDPASRYAPDRFSGSTYDQSSVQDHNVNYANRDMRIANRFAEKPVVTSPPARTQGTAVSQNITQDRLQDMSMLAIREYYSARDVNEVVLCIKDLNSPSFHASMVSIWVTDSFERKDTERDLLAQLLVKLVKSQDGPLGQAQLIKGFESVLSTLEDAVNDAPKAPEFLGRVFAKAITEHVVSLNEIGHLIHEGGELPGSLLEGGLAADVLGSILEAIKMDKGDAVLSEICASSNLRLESFRPPEPLTSRKLEKFI 1823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1737g00016 1823 MobiDBLite consensus disorder prediction 841 867 - -
Vium1737g00016 1823 MobiDBLite consensus disorder prediction 807 827 - -
Vium1737g00016 1823 MobiDBLite consensus disorder prediction 626 646 - -
Vium1737g00016 1823 MobiDBLite consensus disorder prediction 933 947 - -
Vium1737g00016 1823 MobiDBLite consensus disorder prediction 1562 1593 - -
Vium1737g00016 1823 Pfam MIF4G domain 1200 1422 IPR003890 GO:0003723|GO:0005515
Vium1737g00016 1823 Gene3D - 1200 1435 - -
Vium1737g00016 1823 MobiDBLite consensus disorder prediction 1427 1446 - -
Vium1737g00016 1823 MobiDBLite consensus disorder prediction 1 255 - -
Vium1737g00016 1823 MobiDBLite consensus disorder prediction 398 422 - -
Vium1737g00016 1823 Coils Coil 1282 1302 - -
Vium1737g00016 1823 MobiDBLite consensus disorder prediction 482 509 - -
Vium1737g00016 1823 MobiDBLite consensus disorder prediction 1053 1091 - -
Vium1737g00016 1823 Gene3D - 1627 1823 - -
Vium1737g00016 1823 ProSiteProfiles MI domain profile. 1635 1759 IPR003891 -
Vium1737g00016 1823 MobiDBLite consensus disorder prediction 807 914 - -
Vium1737g00016 1823 FunFam Eukaryotic translation initiation factor 4G 1200 1435 - -
Vium1737g00016 1823 SMART ma3_7 1636 1750 IPR003891 -
Vium1737g00016 1823 MobiDBLite consensus disorder prediction 47 146 - -
Vium1737g00016 1823 SUPERFAMILY ARM repeat 1630 1820 IPR016024 -
Vium1737g00016 1823 MobiDBLite consensus disorder prediction 18 32 - -
Vium1737g00016 1823 MobiDBLite consensus disorder prediction 665 688 - -
Vium1737g00016 1823 MobiDBLite consensus disorder prediction 1053 1077 - -
Vium1737g00016 1823 MobiDBLite consensus disorder prediction 970 987 - -
Vium1737g00016 1823 MobiDBLite consensus disorder prediction 927 987 - -
Vium1737g00016 1823 Pfam MA3 domain 1641 1748 IPR003891 -
Vium1737g00016 1823 SUPERFAMILY ARM repeat 1194 1424 IPR016024 -
Vium1737g00016 1823 FunFam Eukaryotic translation initiation factor 4G 1629 1822 - -
Vium1737g00016 1823 SMART if4_15 1200 1422 IPR003890 GO:0003723|GO:0005515
Vium1737g00016 1823 MobiDBLite consensus disorder prediction 616 653 - -
Vium1737g00016 1823 MobiDBLite consensus disorder prediction 948 964 - -
Vium1737g00016 1823 MobiDBLite consensus disorder prediction 1292 1320 - -
Vium1737g00016 1823 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 356 1823 IPR045208 GO:0003743
Vium1737g00016 1823 MobiDBLite consensus disorder prediction 1427 1467 - -
Vium1737g00016 1823 MobiDBLite consensus disorder prediction 219 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1737g00016 Vium-Chr1737 301758 310942 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1737g00016 1 1822 Eukaryotic Initiation Factors Gene Family AT3G60240 44.742 0.0 1279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1737g00016 K03260 - gmx:100796636 2810.02