Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1737g00012 ATGTCATTATCAGATACCAGAGAATCTCCTCAATATCTACTTCAATACCAAGTTCAAATACCATTTTTCTCTCACAAACCATTCACCAAAACCTCAGCCATGAAGCTGAATCGCCTCTGCATCGTTTTACCACCAAATTCTGGTGAAATGGTGGTGCCACTTGAAAAGGGTGTTCAACAAGAACCCTTCCAAACACCAGAGAAACAAGTTGTTGAGGCCAAACAGCCTCACAGGGCATGTGGGGGACAAGTTCTTGCTTCTCTTGGAGATTTTTTGGGCAAGTTGTATGACTCAGGGTGGTGGAGAATTTGCCAAAAGGGAGAGCACAAAGAGAAGCACGACTCTGGTGTGTTGTTTCATGACATGGATGGTGTGCAAGTTTCTGTTAACGTTGGCAGGGACAACCCCAGAATTTTCAGCTATGCAGAGCTGTTCATAGGGTCTAATGGTTTCAGTGAAGACCAAGTTTTGGGGAGTGGAGGGTTTGGCAAAGTGTACAAGGCCGTTTTGCCGAGTGATGGAACCGTGGTTGCTGTGAAGTGCTGTTTGGCAGGGAAAGGGAAGCAGTTTGAGAAAAGTTTTGCAGCGGAGTTAACAGCCGTCGCTGATCTTCGCCACAAGAATCTTGTGAGGCTGAGGGGTTGGTGTGTCTATGAAGATCAGTTGCATCTTGTTTATGACTACATGCCAAACCGAAGCCTTGACCGTGTTCTGTTTCGCAGACATGAGAATTTGAAGGCCAAGCCTCTTCAATGGGGACAGAGAGTGAAGATTGTGAAAGGTTTGGCAGCTGCATTGTACTATCTCCATGAGCAACTAGAGACTCAAATCATTCATAGGGATGTTAAAACCAGCAACGTTATGCTTGATTCCCATTACAATGCTCGGTTGGGTGACTTTGGCATGGCAAGGTGGCTAGAGCATGAGCTTGAGTATGAGTATAAGAATAAGAACAGGAAAACAATATCAATCAGAAGTGACCATTTCAGATTGGGAGAGACGTCAAGAGTAGGGGGCACAATTGGGTATCTTCCTCCTGAAAGCTTGCAGAAACAAAGCAATGCTACCTCCAAATCTGATGTCTTCAGTTTTGGGATTGTTGTGTTAGAGGTGGCATCTGGAAGGAGAGCAATTGATCTCACACAGCCAGATGAACAAATGATTCTGCTTGACTGGATTAGAAGGCTTTCTGATGAAGGGAAGCTTCTGGAAGCAGCTGATACAAGGCTACCGGATGGATCCTTCATGCTGTCAGAGATGCAGCATTTCATTCACACAGGCCTCCTCTGCACACTCCATGACCCACAATTGAGGCCAAGCATGAAATGGGTAGTGGAAGCTCTTTCTGACTTTTCTTTTAAACTACCACCACTCCCTTCTTTTCTCTCCCACCCTTTATACATCTCTTTGTCTTCCCCATCTGATACTAGTCACAGTCCAAGCAGCACAAGTGGCACTAGCTCCACCACAGATAATGCAAGCATAACCAACAACAATACCTCAAACTATGTCACGGCAGCAGGTGAAACTGTGTATGTAACCGCTGAGTACAAAAACAGTGAAATCATCTCTTCTAAGAGCAATCACCACCAGCGACCATTTCCTGTGGTAGAAACTCCAAGAGAAATATCATACAAGGAGATTGTTTCTGCTACAGATAACTTCTCTGATTCAAGAAGGGTGGCTGAGCTAGACTTTGGAACTGCTTACCATGGCATCCTTGATGACAAATGCCATGTTTTGGTGAAACGCCTTGGGATGAAGACTTGTCCTGCACTGCGTGATAGATTCTCCAACGAACTCCGGAACCTGGGACGGCTTCGCCACAGGAATTTGGTTCAACTTCGTGGATGGTGCACTGAGCAAGGAGAGATGCTTGTTATTTATGATTACTCGGCAAGTAGAATCCTCAGCCAACTGCTTATGCATCATAACAATGGAACTCGAAGTGGAGCTTCTTTCCTCCAATGGCATCACAGGTACAACGTAGTGAAAGCACTGGCCTCCGCAGTACTCTATCTACATGAGGAATGGGATGAACAAGTGATCCACAGAAACATTACTTCTTCCGCTGTCATTCTTGAGCCAGATATGAATCCAAGACTCAGCTCTTTCGCTCTGGCAGAATTTTTGTCAAGGAATGAGCATGGTCATCATGTAGTTTCTGACACTAGAAAATCGGTTCGTGGGATTTTCGGCTACATGTCACCAGAATACGTGGAATCAGGCGAAGCAACCACTGAAGCTGATGTTTATAGTTTTGGTGTGGTGGTGCTTGAAGTTGTGAGTGGACAGATGGCAGTAGATTTTAGGCAACCAGAGGTACTTTTGGTGAAGAAGGTTCATGAATTTGAGATGAGAAAAAGACCATTGAAAGAATTAGCTGACATTAGACTCAGTGGAGAATACAATGACCAAGAATTGATGAGATTAGTAAGGTTAGGAATTGCTTGCACAAGTTGCAACCCGCAGCTAAGACCAAGCATGAGACAGATAGTAAGCATCCTTGATGGCAATGACAAATTACTTGTCCAGAGTAGCAAAGAGAGCAGGGAAGAATGGAGACAAAGAAATTACCGTTCTTTGTCAATGGTTAAGAGAATCCAAGCTCTAGGAATACAGTAA 2625 0.4457 MSLSDTRESPQYLLQYQVQIPFFSHKPFTKTSAMKLNRLCIVLPPNSGEMVVPLEKGVQQEPFQTPEKQVVEAKQPHRACGGQVLASLGDFLGKLYDSGWWRICQKGEHKEKHDSGVLFHDMDGVQVSVNVGRDNPRIFSYAELFIGSNGFSEDQVLGSGGFGKVYKAVLPSDGTVVAVKCCLAGKGKQFEKSFAAELTAVADLRHKNLVRLRGWCVYEDQLHLVYDYMPNRSLDRVLFRRHENLKAKPLQWGQRVKIVKGLAAALYYLHEQLETQIIHRDVKTSNVMLDSHYNARLGDFGMARWLEHELEYEYKNKNRKTISIRSDHFRLGETSRVGGTIGYLPPESLQKQSNATSKSDVFSFGIVVLEVASGRRAIDLTQPDEQMILLDWIRRLSDEGKLLEAADTRLPDGSFMLSEMQHFIHTGLLCTLHDPQLRPSMKWVVEALSDFSFKLPPLPSFLSHPLYISLSSPSDTSHSPSSTSGTSSTTDNASITNNNTSNYVTAAGETVYVTAEYKNSEIISSKSNHHQRPFPVVETPREISYKEIVSATDNFSDSRRVAELDFGTAYHGILDDKCHVLVKRLGMKTCPALRDRFSNELRNLGRLRHRNLVQLRGWCTEQGEMLVIYDYSASRILSQLLMHHNNGTRSGASFLQWHHRYNVVKALASAVLYLHEEWDEQVIHRNITSSAVILEPDMNPRLSSFALAEFLSRNEHGHHVVSDTRKSVRGIFGYMSPEYVESGEATTEADVYSFGVVVLEVVSGQMAVDFRQPEVLLVKKVHEFEMRKRPLKELADIRLSGEYNDQELMRLVRLGIACTSCNPQLRPSMRQIVSILDGNDKLLVQSSKESREEWRQRNYRSLSMVKRIQALGIQ 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1737g00012 874 ProSiteProfiles Protein kinase domain profile. 151 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1737g00012 874 Gene3D Phosphorylase Kinase; domain 1 123 228 - -
Vium1737g00012 874 FunFam Receptor like protein kinase S.2 125 228 - -
Vium1737g00012 874 ProSitePatterns Protein kinases ATP-binding region signature. 157 186 IPR017441 GO:0005524
Vium1737g00012 874 FunFam Receptor like protein kinase S.2 633 859 - -
Vium1737g00012 874 FunFam Receptor like protein kinase S.2 229 454 - -
Vium1737g00012 874 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Vium1737g00012 874 Pfam Protein tyrosine and serine/threonine kinase 561 836 IPR001245 GO:0004672|GO:0006468
Vium1737g00012 874 FunFam Receptor like protein kinase S.2 515 631 - -
Vium1737g00012 874 SUPERFAMILY Protein kinase-like (PK-like) 530 836 IPR011009 -
Vium1737g00012 874 MobiDBLite consensus disorder prediction 473 500 - -
Vium1737g00012 874 SMART serkin_6 151 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1737g00012 874 ProSiteProfiles Protein kinase domain profile. 555 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1737g00012 874 PANTHER - 113 450 - -
Vium1737g00012 874 Pfam Protein kinase domain 152 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1737g00012 874 Gene3D Transferase(Phosphotransferase) domain 1 636 862 - -
Vium1737g00012 874 SUPERFAMILY Protein kinase-like (PK-like) 135 488 IPR011009 -
Vium1737g00012 874 Gene3D Transferase(Phosphotransferase) domain 1 229 453 - -
Vium1737g00012 874 Gene3D Phosphorylase Kinase; domain 1 514 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1737g00012 Vium-Chr1737 265785 268629 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1737g00012 541 837 Receptor kinase-like Gene Family AT5G55830 36.545 1.72e-53 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium1737g00012 Pkinase 3.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1737g00012 - - vun:114184452 1607.04