Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1737g00010 ATGTATCAGGCTGTTGCTCGCCGGACTCGAAGCAAGAAACCTTGGGTGGTCGGTGGTGGTTTGACAATGGGTCGGAAAAGAAGAAAGGTGGATGAAGAAGATGATGATGAAGTGATTTGCTTGGGAGAAAATTTGGAAGGGGAAGGGGCTGCAAGAGAGAAATTTGCATCTGCGTCTGGGGCTTCATGTTCATCACCAGATGATATGAAGAATGGTTTCGCGTATTTGGGAGAGACTGAGGATGATCCTGATCCTGATCCTGAAGAGGTGGTTGACCTCGAAGGCCATGATGGGGCTGAACTGAGGATTGATGAGTGTTACGAAACCAAGGGTTTTCAGGTTAAGGAGGAAGAGAGGGATGAGGAGGGTGAAGGTTGTTCTGTAGCAGCTGTGAGAGCTGATAAAGGTGAGAGCTTTGATGATGATGAATACGGTACTAAACCTGAAAAGCCGGTTGTTTTGTTGCCCGATTCATTTAGGGGTGGACGTAGTAGTTCTGATGATGGATATGATTCGTTGTGGTCTTCAACGGAGAGTGAGGATGTTGAGACTAGTGACGATGATTTTAAGGTTGATGAGGATGATGATGATGATGATGTTGAGAGTGAATACTCTAGCAGTGAGGAGAGTGATTCTTCTGAAGATGATGAGAGGAGGGGATACAAGATGGTTAAGGAAAGAGTAAGAAAGGTGGTGAGTGAATCTGAGAGCAGTAGAGTTTGGAGAAGGAAAGGTGAAAGAAAGAATAAGCATGTAGAGAAAGAGTTGGTGGAGAAATGGAATGGTGGTGATTGTGCTAGCGTGGCTTCTAGTAAATCAGAGATCAATAAGGAGGAAACAAAAAGGGCACAAGAGAATAAACAAAGAGCAAACAGAGTAGAGAATGTCAATAATGCTGATCCTGAAGTTTTGAGTGATCAGGGGAAAAGTTCAGGTCTCTATGTGTCTTCTGATGATGATGCACTAGAGGATAAGGAGAAAGGAGTGAGGGATCATAAAAGGGTGTTTTTTCAAAACGAGACAAGATATTCAAATGTGATCAATAAGTGTGGGAAAAATAATAAGGTCAAGGCCAATGCTAAAGAAACTGGACATAAAGATGAGCTGCATGAAATGCTGAGGATGTCATCGACAACAAAGAACCACTGTTTTGAATTCTTCAATGAATGCTTTAGGGGCAAGCGTGATTCTGCTAAAGATGTTTCAAGAGATTTGGATAAGAAGGTTGGTGTTGATGAGGGTCAGACTCGGCCATTTGGTTCAAGGGAGACAATTTCTTTAAACTGGAACTCCATGATGAAAGAAAAACCTGTTGAGAAATCTGAGTCACAGCAAGAGTTGGATATGCTGTGGGAAGAAATGGAGATGTTGCTTCAAGCTGAAAAAATTGGAGTCCAGAGTGATAATATAGAGATAAATGAACCAAGAGAAATCGAAGAAAATCCAGCCATTCGATGCAAACATGACACCATTTTTGATGAGCAGATAGGGATTCACTGTAGATGGTGTGGTTGGATTGAAACTGAAATTAAATATATCACACCGCCATTTATAGATTCTGAGAGATATGGCAGAAGGGTGTCGTCTGGTGGAGGGAACAGCTCGCGACTTGATGGGGTTCTCTTCAGTGAATGTGGTGAAGAGTCGGAAGCAGTTAGGTCTCACAATCATGGCACAGTTTGGGACCTTACTCCAGGCATAAAAGAAAGCTTATTTCCTCACCAACAAGAGGGATTTGAGTTTATTTGGGCAAATTTGGCAGGAACCATTGAACTTTCAAAGTTGAAGATGGTTGATCCTCAGAGTGAGGGTGGGTGCATAGTTTCTCATGCTCCTGGAACTGGAAAGACGAGGTTGACCATGGTGTTTCTGCAGACATATTTGCAGGTGTTTCCTAAGTGTTTACCCATTATCATTGCTCCTGCCAACATATTACTCACTTGGGAAGATGAGCTGAGGAAGTGGAACATAGGAATTCCATTCCACAATTTGAACAATGCTGAATTATCAGGGAAGGAACATGCCATTAGGGAAGTTGATTGGTTATTCAACCAACAGCAAAAAAAGGATGTCATAAGAATGGTGAAGTTGTGTTCTTGGTACAAAGAGAAGAGCATTCTGTTAATCAGCTACAATCTTTATGAAAAGCTAGCCGGGGGAAAGTCTGAAGGAGATGGGGAGAAAGAGAAGAACAATAGAAAGAATGGAAAACAGAAGAAAAATAGAAAGATCGTAAAAGAGAAGAAACGTGTTGAAACTGAATTGGGAAATGTTCTGAGAGACTATCCTGATTTATTAGTTCTTGATGAAGGCCACACACCAAGGAACAAGCGAAGCTGTATTTGGAAGGTTCTCTCAGAGAGTAGAAGTCAGAAGCGGATCCTTCTTTCAGGGACTCCTTTCCAGAACAATTTTCTTGAACTCTACAATATTTTGTGCTTAATGAAACCATCTTTTCCTGACAGCATACCGCAGGAACTCAAGAAGTTCTTGAAAAACAAACTGATACAGGAAACGAAAGCTTCAAAAGACGAGAGTTGGGAACCCATTTCTGCTGGAAATCAAGCCGATGAAAAGATAAACCAGCTAAAGCTGCTGATGAATCCCTTTGTTCATGTTCACAAAGGTAGTATTCTTCAGAAGAATCTTCCTGGTTTAAGAGACTGTGTGCTGGTTTTGAAGCCAGAATGCTTGCAGAAAGACATTCTGGAGAGCATTGATTGTTCTCAAAATGCACTTAACTTCGAGCACAAGTTGGCCTTGGTCTCTGTTCATCCCTCCCTTTTCCTAAACTGTGCTCTGTCAAAGAAAGAAGAATCTGTTATTGATTCGGAGCTGTTGAAAAGGATTAGATTGGACTCTTATCAAGGGGTCAAAACCAAATTTCTGATTGAGTTTGTGAGACTATGTGATGCAGTTAATGAGAAAGTCCTTGTGTTCAGCCAGTTCATTGATACCTTATGCTTGATCAGGGACCAGCTGGAGTCAGCCTTCAACTGGAGTGTGGGAACGGACGTGTTGTATATGCATGGAAAGCTTGATCAAAAGCAAAAGCAATTTCTCATTCACAATTTCAATGATGCAAATAGCCAGGCAAAGGTGTTGCTAGCTTCTATAAAAGCATCTTCTGAAGGCATTAACCTGGTTGGAGCTTCAAGGGTCGTGCTTGTTGATGTTGTTTGGAATCCCTCAGTGGAAAGGCAAGCTATTTGTAGAGCATATAGACTTGGACAGAAGAGGGTTGTTTATACTTATCATCTTCTTGCACAGGGCACCCCTGAATGTGCAAAATATGATAAACAGTCAGAGAAGGACCGCTTATCTGAACTGGTATTCTCAAGTAGGAATGTTGAAAATGATAAGCTTGAAAATGTTGGAGTGAAGTTTGAGGATAAAGTTCTTGATCTCATGGTTCAGCATAACAGTCTCAAGGACATATTTGGTCAATGTCTGGTTCAACCAAAGGACAGAGATTTGGAAACTTTGGGCCCTTAA 3495 0.4163 MYQAVARRTRSKKPWVVGGGLTMGRKRRKVDEEDDDEVICLGENLEGEGAAREKFASASGASCSSPDDMKNGFAYLGETEDDPDPDPEEVVDLEGHDGAELRIDECYETKGFQVKEEERDEEGEGCSVAAVRADKGESFDDDEYGTKPEKPVVLLPDSFRGGRSSSDDGYDSLWSSTESEDVETSDDDFKVDEDDDDDDVESEYSSSEESDSSEDDERRGYKMVKERVRKVVSESESSRVWRRKGERKNKHVEKELVEKWNGGDCASVASSKSEINKEETKRAQENKQRANRVENVNNADPEVLSDQGKSSGLYVSSDDDALEDKEKGVRDHKRVFFQNETRYSNVINKCGKNNKVKANAKETGHKDELHEMLRMSSTTKNHCFEFFNECFRGKRDSAKDVSRDLDKKVGVDEGQTRPFGSRETISLNWNSMMKEKPVEKSESQQELDMLWEEMEMLLQAEKIGVQSDNIEINEPREIEENPAIRCKHDTIFDEQIGIHCRWCGWIETEIKYITPPFIDSERYGRRVSSGGGNSSRLDGVLFSECGEESEAVRSHNHGTVWDLTPGIKESLFPHQQEGFEFIWANLAGTIELSKLKMVDPQSEGGCIVSHAPGTGKTRLTMVFLQTYLQVFPKCLPIIIAPANILLTWEDELRKWNIGIPFHNLNNAELSGKEHAIREVDWLFNQQQKKDVIRMVKLCSWYKEKSILLISYNLYEKLAGGKSEGDGEKEKNNRKNGKQKKNRKIVKEKKRVETELGNVLRDYPDLLVLDEGHTPRNKRSCIWKVLSESRSQKRILLSGTPFQNNFLELYNILCLMKPSFPDSIPQELKKFLKNKLIQETKASKDESWEPISAGNQADEKINQLKLLMNPFVHVHKGSILQKNLPGLRDCVLVLKPECLQKDILESIDCSQNALNFEHKLALVSVHPSLFLNCALSKKEESVIDSELLKRIRLDSYQGVKTKFLIEFVRLCDAVNEKVLVFSQFIDTLCLIRDQLESAFNWSVGTDVLYMHGKLDQKQKQFLIHNFNDANSQAKVLLASIKASSEGINLVGASRVVLVDVVWNPSVERQAICRAYRLGQKRVVYTYHLLAQGTPECAKYDKQSEKDRLSELVFSSRNVENDKLENVGVKFEDKVLDLMVQHNSLKDIFGQCLVQPKDRDLETLGP 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1737g00010 1164 Pfam SNF2-related domain 581 901 IPR000330 GO:0005524|GO:0140658
Vium1737g00010 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 562 839 IPR027417 -
Vium1737g00010 1164 Coils Coil 268 296 - -
Vium1737g00010 1164 MobiDBLite consensus disorder prediction 290 314 - -
Vium1737g00010 1164 MobiDBLite consensus disorder prediction 720 745 - -
Vium1737g00010 1164 Gene3D - 887 1149 IPR027417 -
Vium1737g00010 1164 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 597 818 IPR014001 -
Vium1737g00010 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 763 1121 IPR027417 -
Vium1737g00010 1164 CDD SF2_C_SNF 934 1088 - -
Vium1737g00010 1164 SMART helicmild6 992 1077 IPR001650 -
Vium1737g00010 1164 MobiDBLite consensus disorder prediction 92 148 - -
Vium1737g00010 1164 MobiDBLite consensus disorder prediction 212 260 - -
Vium1737g00010 1164 MobiDBLite consensus disorder prediction 58 327 - -
Vium1737g00010 1164 MobiDBLite consensus disorder prediction 274 289 - -
Vium1737g00010 1164 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 965 1133 IPR001650 -
Vium1737g00010 1164 MobiDBLite consensus disorder prediction 180 211 - -
Vium1737g00010 1164 Gene3D - 545 871 IPR038718 -
Vium1737g00010 1164 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 93 1158 IPR044567 GO:0080188
Vium1737g00010 1164 MobiDBLite consensus disorder prediction 720 734 - -
Vium1737g00010 1164 SMART ultradead3 567 826 IPR014001 -
Vium1737g00010 1164 Pfam Helicase conserved C-terminal domain 964 1077 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1737g00010 Vium-Chr1737 225149 229489 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1737g00010 975 1129 RAD5 or RAD16-like Gene Family AT5G43530 36.129 8.41e-19 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium1737g00010 SNF2_N 1.6e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1737g00010 K10875 - gmx:100807262 1231.85