Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1737g00009 ATGTATCAGGCTGTTGCTCGCCGGACTCGAAGCAAGAAACCTTGGGTGGTCGGTGGTGGTTTGACAATGGGTCGGAAAAGAAGAAAGGTGGATGAAGAAGATGATGATGAAGTGATTTGCTTGGGAGAAAATTTGGAAGGGGAAGGGGCTGCAAGAGAGAAATTTGCATCTGCGTCTGGGGCTTCATGTTCATCACCAGATGATATGAAGAATGGTTTCGCGTATTTGGGAGAGACTGAGGATGATCCTGATCCTGATCCTGAAGAGGTGGTTGACCTCGAAGGCCATGATGGGGCTGAACTGAGGATTGATGAGTGTTACGAAACCAAGGGTTTTCAGGTTAAGGAGGAAGAGAGGGATGAGGAGGGTGAAGGTTGTTCTGTAGCAGCTGTGAGAGCTGATAAAGGTGAGAGCTTTGATGATGATGAATACGGTACTAAACCTGAAAAGCCGGTTGTTTTGTTGCCCGATTCATTTAGGGGTGGACGTAGTAGTTCTGATGATGGATATGATTCGTTGTGGTCTTCAACGGAGAGTGAGGATGTTGAGACTAGTGACGATGATTTTAAGGTTGATGAGGATGATGATGATGATGATGTTGAGAGTGAATACTCTAGCAGTGAGGAGAGTGATTCTTCTGAAGATGATGAGAGGAGGGGATACAAGATGGTTAAGGAAAGAGTAAGAAAGGTGGTGAGTGAATCTGAGAGCAGTAGAGTTTGGAGAAGGAAAGGTGAAAGAAAGAATAAGCATGTAGAGAAAGAGTTGGTGGAGAAATGGAATGGTGGTGATTGTGCTAGCGTGGCTTCTAGTAAATCAGAGATCAATAAGGAGGAAACAAAAAGGGCACAAGAGAATAAACAAAGAGCAAACAGAGTAGAGAATGTCAATAATGCTGATCCTGAAGTTTTGAGTGATCAGGGGAAAAGTTCAGGTCTCTATGTGTCTTCTGATGATGATGCACTAGAGGATAAGGAGAAAGGAGTGAGGGATCATAAAAGGGTGTTTTTTCAAAACGAGACAAGATATTCAAATGTGATCAATAAGTGTGGGAAAAATAATAAGGTCAAGGCCAATGCTAAAGAAACTGGACATAAAGATGAGCTGCATGAAATGCTGAGGATGTCATCGACAACAAAGAACCACTGTTTTGAATTCTTCAATGAATGCTTTAGGGGCAAGCGTGATTCTGCTAAAGATGTTTCAAGAGATTTGGATAAGAAGGTTGGTGTTGATGAGGGTCAGACTCGGCCATTTGGTTCAAGGGAGACAATTTCTTTAAACTGGAACTCCATGATGAAAGAAAAACCTGTTGAGAAATCTGAGTCACAGCAAGAGTTGGATATGCTGTGGGAAGAAATGGAGATGTTGCTTCAAGCTGAAAAAATTGGAGTCCAGATAGATTCTGAGAGATATGGCAGAAGGGTGTCGTCTGGTGGAGGGAACAGCTCGCGACTTGATGGGGTTCTCTTCAGTGAATGTGGTGAAGAGTCGGAAGCAGTTAGGTCTCACAATCATGGCACAGTTTGGGACCTTACTCCAGGCATAAAAGAAAGCTTATTTCCTCACCAACAAGAGGGATTTGAGTTTATTTGGGCAAATTTGGCAGGAACCATTGAACTTTCAAAGTTGAAGATGGTTGATCCTCAGAGTGAGGGTGGGTGCATAGTTTCTCATGCTCCTGGAACTGGAAAGACGAGGTTGACCATGGTGTTTCTGCAGACATATTTGCAGGTGTTTCCTAAGTGTTTACCCATTATCATTGCTCCTGCCAACATATTACTCACTTGGGAAGATGAGCTGAGGAAGTGGAACATAGGAATTCCATTCCACAATTTGAACAATGCTGAATTATCAGGGAAGGAACATGCCATTAGGGAAGTTGATTGGTTATTCAACCAACAGCAAAAAAAGGATGTCATAAGAATGGTGAAGTTGTGTTCTTGGTACAAAGAGAAGAGCATTCTGTTAATCAGCTACAATCTTTATGAAAAGCTAGCCGGGGGAAAGTCTGAAGGAGATGGGGAGAAAGAGAAGAACAATAGAAAGAATGGAAAACAGAAGAAAAATAGAAAGATCGTAAAAGAGAAGAAACGTGTTGAAACTGAATTGGGAAATGTTCTGAGAGACTATCCTGATTTATTAGTTCTTGATGAAGGCCACACACCAAGGAACAAGCGAAGCTGTATTTGGAAGGTTCTCTCAGAGAGTAGAAGTCAGAAGCGGATCCTTCTTTCAGGGACTCCTTTCCAGAACAATTTTCTTGAACTCTACAATATTTTGTGCTTAATGAAACCATCTTTTCCTGACAGCATACCGCAGGAACTCAAGAAGTTCTTGAAAAACAAACTGATACAGGAAACGAAAGCTTCAAAAGACGAGAGTTGGGAACCCATTTCTGCTGGAAATCAAGCCGATGAAAAGATAAACCAGCTAAAGCTGCTGATGAATCCCTTTGTTCATGTTCACAAAGGTAGTATTCTTCAGAAGAATCTTCCTGGTTTAAGAGACTGTGTGCTGGTTTTGAAGCCAGAATGCTTGCAGAAAGACATTCTGGAGAGCATTGATTGTTCTCAAAATGCACTTAACTTCGAGCACAAGTTGGCCTTGGTCTCTGTTCATCCCTCCCTTTTCCTAAACTGTGCTCTGTCAAAGAAAGAAGAATCTGTTATTGATTCGGAGCTGTTGAAAAGGATTAGATTGGACTCTTATCAAGGGGTCAAAACCAAATTTCTGATTGAGTTTGTGAGACTATGTGATGCAGTTAATGAGAAAGTCCTTGTGTTCAGCCAGTTCATTGATACCTTATGCTTGATCAGGGACCAGCTGGAGTCAGCCTTCAACTGGAGTGTGGGAACGGACGTGTTGTATATGCATGGAAAGCTTGATCAAAAGCAAAAGCAATTTCTCATTCACAATTTCAATGATGCAAATAGCCAGGCAAAGGTGTTGCTAGCTTCTATAAAAGCATCTTCTGAAGGCATTAACCTGGTTGGAGCTTCAAGGGTCGTGCTTGTTGATGTTGTTTGGAATCCCTCAGTGGAAAGGCAAGCTATTTGTAGAGCATATAGACTTGGACAGAAGAGGGTTGTTTATACTTATCATCTTCTTGCACAGGGCACCCCTGAATGTGCAAAATATGATAAACAGTCAGAGAAGGACCGCTTATCTGAACTGGTATTCTCAAGTAGGAATGTTGAAAATGATAAGCTTGAAAATGTTGGAGTGAAGTTTGAGGATAAAGTTCTTGATCTCATGGTTCAGCATAACAGTCTCAAGGACATATTTGGTCAATGTCTGGTTCAACCAAAGGACAGAGATTTGGAAACTTTGGGCCCTTAA 3342 0.4189 MYQAVARRTRSKKPWVVGGGLTMGRKRRKVDEEDDDEVICLGENLEGEGAAREKFASASGASCSSPDDMKNGFAYLGETEDDPDPDPEEVVDLEGHDGAELRIDECYETKGFQVKEEERDEEGEGCSVAAVRADKGESFDDDEYGTKPEKPVVLLPDSFRGGRSSSDDGYDSLWSSTESEDVETSDDDFKVDEDDDDDDVESEYSSSEESDSSEDDERRGYKMVKERVRKVVSESESSRVWRRKGERKNKHVEKELVEKWNGGDCASVASSKSEINKEETKRAQENKQRANRVENVNNADPEVLSDQGKSSGLYVSSDDDALEDKEKGVRDHKRVFFQNETRYSNVINKCGKNNKVKANAKETGHKDELHEMLRMSSTTKNHCFEFFNECFRGKRDSAKDVSRDLDKKVGVDEGQTRPFGSRETISLNWNSMMKEKPVEKSESQQELDMLWEEMEMLLQAEKIGVQIDSERYGRRVSSGGGNSSRLDGVLFSECGEESEAVRSHNHGTVWDLTPGIKESLFPHQQEGFEFIWANLAGTIELSKLKMVDPQSEGGCIVSHAPGTGKTRLTMVFLQTYLQVFPKCLPIIIAPANILLTWEDELRKWNIGIPFHNLNNAELSGKEHAIREVDWLFNQQQKKDVIRMVKLCSWYKEKSILLISYNLYEKLAGGKSEGDGEKEKNNRKNGKQKKNRKIVKEKKRVETELGNVLRDYPDLLVLDEGHTPRNKRSCIWKVLSESRSQKRILLSGTPFQNNFLELYNILCLMKPSFPDSIPQELKKFLKNKLIQETKASKDESWEPISAGNQADEKINQLKLLMNPFVHVHKGSILQKNLPGLRDCVLVLKPECLQKDILESIDCSQNALNFEHKLALVSVHPSLFLNCALSKKEESVIDSELLKRIRLDSYQGVKTKFLIEFVRLCDAVNEKVLVFSQFIDTLCLIRDQLESAFNWSVGTDVLYMHGKLDQKQKQFLIHNFNDANSQAKVLLASIKASSEGINLVGASRVVLVDVVWNPSVERQAICRAYRLGQKRVVYTYHLLAQGTPECAKYDKQSEKDRLSELVFSSRNVENDKLENVGVKFEDKVLDLMVQHNSLKDIFGQCLVQPKDRDLETLGP 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1737g00009 1113 Gene3D - 836 1098 IPR027417 -
Vium1737g00009 1113 MobiDBLite consensus disorder prediction 669 683 - -
Vium1737g00009 1113 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 511 788 IPR027417 -
Vium1737g00009 1113 Coils Coil 268 296 - -
Vium1737g00009 1113 MobiDBLite consensus disorder prediction 290 314 - -
Vium1737g00009 1113 SMART ultradead3 516 775 IPR014001 -
Vium1737g00009 1113 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 471 1107 IPR044567 GO:0080188
Vium1737g00009 1113 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 712 1070 IPR027417 -
Vium1737g00009 1113 CDD SF2_C_SNF 883 1037 - -
Vium1737g00009 1113 MobiDBLite consensus disorder prediction 92 148 - -
Vium1737g00009 1113 Gene3D - 495 820 IPR038718 -
Vium1737g00009 1113 MobiDBLite consensus disorder prediction 669 694 - -
Vium1737g00009 1113 MobiDBLite consensus disorder prediction 58 327 - -
Vium1737g00009 1113 MobiDBLite consensus disorder prediction 212 260 - -
Vium1737g00009 1113 MobiDBLite consensus disorder prediction 274 289 - -
Vium1737g00009 1113 Pfam SNF2-related domain 530 850 IPR000330 GO:0005524|GO:0140658
Vium1737g00009 1113 Pfam Helicase conserved C-terminal domain 913 1026 IPR001650 -
Vium1737g00009 1113 SMART helicmild6 941 1026 IPR001650 -
Vium1737g00009 1113 MobiDBLite consensus disorder prediction 180 211 - -
Vium1737g00009 1113 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 914 1082 IPR001650 -
Vium1737g00009 1113 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 546 767 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1737g00009 Vium-Chr1737 225149 229489 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1737g00009 924 1078 RAD5 or RAD16-like Gene Family AT5G43530 36.129 8.13e-19 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium1737g00009 SNF2_N 1.4e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1737g00009 K10875 - gmx:100807262 1142.87