Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1736g00001 GAATATGCTTCTGAAGTTATCCAAAGCAATGATTCTGAACAAGAAATTGAGGATATTACTGAACATAAACATGAATGCCGAGGTGTACATTGGCCTGTGGTACTGCCATCTGAGATAGTTTTGGCTGGCCGAATACTAGCAAGGTTTTTGCTGAATAGCACGTCTGATAGTATTATAAACTTTGTGGAAAGGCTGGAGCTTTCTCATTGTTACAAACATATGTCATCTGAAAGCAAATTGGATTCACACATATATGCCATTGTATTGTTGTATTGTCTTCAACACTCATGTGGAACCATGTTTTCCATAGACGGAGTCTCCATATCACAGGTTGTCATTATTATCTCTCAAATTAAAGTGAATTGTATGACCATTGTTCGTTTAAAATCAATTGATGCTCATGGACTATCAGGTCATTTTGGACAATTTCCATTAAAATCTGATGCACATTCAACTAGTAACGTGGAACAGGTCAGAGTGGGTAAAGCTATCTATAAAGCTGCCAGTTTATTTAACCATTCTTGCCGACCAAATGCTCATGCATATTTTCTTTCACGCACTCTTTACCTACGAATCACACATGGTGTAGCAGCTGGTTGTCAGCTAGAACTGTCTTATGGTCCACAGGTTGGGTTGTGGGATTGTAAAGATCGCCTTAACTTTCTCAAAGATGAATATGCGTTTCATTGTCAGTGTATTGGTTGTTCAGAAGTCAATGTATCCGACATAGTCCTCAATGCCTTCCATTGTGTCAATCCAAATTGTTCTGGTGCAGTGTTAGAAAGCAGAGTACATGACTGTGAGCAGCAGAAAATCAAGCACTTCACTATTACTGACCTTGTTGAAAAGAATGATGACATTTGTGAAGTATCTCTTAATGTCTTCAAACAAAACGGGGCCCATATTCATGGTCAACCTGGATACTGTTTGAAATGTGGTTCTTACTGTGATTTGGAGTCTTCTCATGCTGCAGTCAGTGAAGCTCTAATATGCATAAAAAGGTTGCAGGATGCAAAATCTTCAAAAGAAATTTCGCGTATTACTATTTCTGATGCTTTGATATCTCTTCAATCACTAAGATTAAATTTGCATGCTTACAACAAGCTTATTGCGGAGGCAGAAGACAGCATTGCTCAGGCTTTTTGTTTAGTACGAGAATTACAATTATCTGTTGATCATTGCAAAGCTTCTATCCAGATTCTGGAAAAGCTATACGATACTGATGATATTGTTATTGCTTACGAACTTGTGAAGCTTTCTTCCATCCAACTTTCCTTGGATGATTCTACTGCTATGGAAAGCATAAATCGAATAGATGATATCTTCTCACGTTACTATGGATGTCATGCAGACTTGGTGTTCCCTTATCTTCAATATCTTAGGGGAGAAATTGAGAAATTTTCAGTGAAGGCCATCCAATAA 1422 0.379 EYASEVIQSNDSEQEIEDITEHKHECRGVHWPVVLPSEIVLAGRILARFLLNSTSDSIINFVERLELSHCYKHMSSESKLDSHIYAIVLLYCLQHSCGTMFSIDGVSISQVVIIISQIKVNCMTIVRLKSIDAHGLSGHFGQFPLKSDAHSTSNVEQVRVGKAIYKAASLFNHSCRPNAHAYFLSRTLYLRITHGVAAGCQLELSYGPQVGLWDCKDRLNFLKDEYAFHCQCIGCSEVNVSDIVLNAFHCVNPNCSGAVLESRVHDCEQQKIKHFTITDLVEKNDDICEVSLNVFKQNGAHIHGQPGYCLKCGSYCDLESSHAAVSEALICIKRLQDAKSSKEISRITISDALISLQSLRLNLHAYNKLIAEAEDSIAQAFCLVRELQLSVDHCKASIQILEKLYDTDDIVIAYELVKLSSIQLSLDDSTAMESINRIDDIFSRYYGCHADLVFPYLQYLRGEIEKFSVKAIQ 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1736g00001 473 Coils Coil 356 376 - -
Vium1736g00001 473 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 2 466 - -
Vium1736g00001 473 SUPERFAMILY SET domain 156 232 IPR046341 -
Vium1736g00001 473 Gene3D Tetratricopeptide repeat domain 215 469 IPR011990 GO:0005515
Vium1736g00001 473 Gene3D SET domain 120 206 IPR046341 -
Vium1736g00001 473 Pfam SET domain 155 207 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium1736g00001 SET 4.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1736g00001 K24634 - vum:124827694 936.406