Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1731g00001 ATGGGTTGCTGTGTCTCAACAAGTAGTCAGAGTGCTCGTAACAGCAGGAGCACTGGAGACACAAACGTTCAGACGTGTCTAGAAATAGGATTCTGTGGTCAAAAGAGTGCAAGGAGAACATTCTCTGACCATGTTATCTCTCTGCACCAGTTACCATCTTTACCCAACAGAATTTTCACCAATGGAAAGAGCAGGTCTTCTTGCATATTTACACAGCAGGGTCGTAAGGGGATTAATCAGGACGCCATGATTGTATGGGAAGATTTCATTTCAGAAGATGTGACCTTTTGTGGTGTCTTTGATGGCCACGGTCCACACGGTCACCTTGTTGCACGCAAAGTCCGGGAAGCCTTGCCACTAAAATTGCTTTCATTTTTGCATTCCTCGGAATCAGGGCAAAATGATTCAGGTAAAACTTGTTTCAGAGGCAGCATGAAGCCTGAAAGTGGAGAGTCTGAGAAAGATGTTGCTGCTGAAGATAAACTGAATTCTATGTGGAGAGAAGCTTTCATGAAGGCATACAAGGCTATGGATAAAGAGCTGAGGTCTCATCCAAATTTGGACTGCTTCTGTAGTGGGAGCACAGCTGTCACTGTAGTGAAACAGGGTTCAAATTTGTTCATGGGCAATATTGGGGATTCCCGAGCAATCATGGGATCCAAGGACATCAATGATGTCATGGTGGCAATTCAGTTGACCGTTGATTTGAAGCCTGATTTGCCAAGAGAAGCAGAAAGAATCAAACGATGCAAGGGTAGGGTATTTGCATTACAAGATGAGCCAGAAGTTCATAGGGTATGGTTACCTTTTGATGATGCACCAGGATTAGCAATGGCTCGAGCATTTGGAGATTTTTGCTTGAAGGAATACGGTGTGATTTCTATACCTGAATTTTCTCATCGGTTACTAACAGACAAAGATCAGTTCATTGTTCTTGCCTCAGATGGGATCTGGGATGTTTTGAGCAACGAAGAGGTAGTTGAGATTGTATCTTCAGCACCAAGTCGATCATCAGCAGCAAGAATTCTGGTGGATTCGGCGGCTCGAGAGTGGAAACTTAAGTATCCTACTTCAAAAGTGGATGACTGTGCTGTTGTGTGCCTGTTTCTGGATGGAAAAATGGATTCAGAATCTGACTGTGAGGAGCAATGCTTCTCTTCTGCTATCATGCAGAGCAACCATTCAGGTAATCTGGTTGAGACAGATGATGGACAAAAGTATGAGCCAACTTTGCAAAGGAACTTTACAGTGAGATCCTCAGAAGAAAATGGGAGGTATGGAGGAAGAGGAGGAGTATCTGTTGATGTTGTTGAAGATGGAAACTCAGTGGTTCCATCAGGGCCTGAAGATCAAAACTGGTTAGGTTTGGAGGGTGTGATCCGAGTAAACTCACTGGTTCAACTTCCTAGATTTTCTGAGGAAAAGCCAAACTGTTGA 1437 0.4384 MGCCVSTSSQSARNSRSTGDTNVQTCLEIGFCGQKSARRTFSDHVISLHQLPSLPNRIFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFISEDVTFCGVFDGHGPHGHLVARKVREALPLKLLSFLHSSESGQNDSGKTCFRGSMKPESGESEKDVAAEDKLNSMWREAFMKAYKAMDKELRSHPNLDCFCSGSTAVTVVKQGSNLFMGNIGDSRAIMGSKDINDVMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVHRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDKDQFIVLASDGIWDVLSNEEVVEIVSSAPSRSSAARILVDSAAREWKLKYPTSKVDDCAVVCLFLDGKMDSESDCEEQCFSSAIMQSNHSGNLVETDDGQKYEPTLQRNFTVRSSEENGRYGGRGGVSVDVVEDGNSVVPSGPEDQNWLGLEGVIRVNSLVQLPRFSEEKPNC 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1731g00001 478 CDD PP2Cc 65 370 IPR001932 -
Vium1731g00001 478 ProSiteProfiles PPM-type phosphatase domain profile. 66 370 IPR001932 -
Vium1731g00001 478 PANTHER PROTEIN PHOSPHATASE 52 368 IPR015655 GO:0004722|GO:0006470
Vium1731g00001 478 MobiDBLite consensus disorder prediction 1 20 - -
Vium1731g00001 478 Pfam Protein phosphatase 2C 92 347 IPR001932 -
Vium1731g00001 478 MobiDBLite consensus disorder prediction 136 157 - -
Vium1731g00001 478 SUPERFAMILY PP2C-like 59 372 IPR036457 -
Vium1731g00001 478 Gene3D - 57 378 IPR036457 -
Vium1731g00001 478 FunFam probable protein phosphatase 2C 52 57 373 - -
Vium1731g00001 478 SMART PP2C_4 55 368 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1731g00001 Vium-Chr1731 8243 12398 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1731g00001 1 476 PP2C-type Phosphatase Gene Family AT1G03590 68.750 0.0 631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1731g00001 - - gmx:100777448 829.32