Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1730g00001 ATGGAGAGCACCGACTCCTCCACCGGGTCACAACAGCAGCCGCAATTGCCACCTGGCTTCCGCTTCCACCCCACCGACGAGGAGCTCGTCGTTCACTACCTCAAGAAAAAAACAGCTTCCGTTCCTCTTCCCGTCGCCATAATCGCTGAGGTTGATCTCTACAAGTTTGATCCATGGGAGCTACCCGCTAAGGCCACGTTTGGGGAGCAGGAGTGGTACTTCTTTAGTCCGAGGGACAGGAAGTATCCGAACGGTGCGAGGCCAAACAGAGCGGCCACTTCTGGGTATTGGAAGGCCACTGGGACCGATAAGCCTGTGTTAACCTCTGGGGGAACCCAGAAGGTTGGAGTGAAAAAGGCTTTGGTTTTCTATGGAGGGAAGCCCCCAAGAGGAATCAAAACTAATTGGATCATGCATGAGTATAGGCTTGCTGATAACAAGCCTAACAATAGGCCTCCTGGCTGTGACTTGGGCAACAAGAAAAACTCTCTAAGGCTTAATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCACAGGTCTCCCATGGAGCATGACAGGGAAGATTCAATGGAAGACATGATTGGAGGGATTCCTCCTTCGATCAACGTGGGTCACATGAGTGGGAGGTATCATCACCATCATCATCATCTTTCAAAGATGTCCACAGGCTACAGCAGTGCATTGCTGGAAAATGACCAGAACCTGTTGGAAGGGATGATGATAGGTAACGGATCAGTGATGAACACAAGTACGACTGGTACTACACCTGGTGCCATGGGGGCCTCAAACTCCAAGGCAGAGCTTTCTTTTGTGCCAACCATGACTCACTCTTCCAACACTTGTAAAAGAACACTCTCGTCGCTGTATTGGAATGATGAGGATTTGGCTGGCACCTCATCATCCAACAAGAGGTTGAATTTGGAAAGTGGGGACAACAATCACGGAAGTGTTGTGAGAACTGATCAAGATAATGGCACTGCCACCTCAATTGTCACTCTGCTTAACCAGCTCCCTCAAACCCCTTCATTGCACCAGCAATCTATGTTGGGATCCATAGGCGATGGACTTCTTAGGACAACATATCAAATACCAGGAATGAATTGGAACTTGGAAGCAGTTGTTAGAGTCTGA 1140 0.4921 MESTDSSTGSQQQPQLPPGFRFHPTDEELVVHYLKKKTASVPLPVAIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSGGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLADNKPNNRPPGCDLGNKKNSLRLNDWVLCRIYKKSNTHRSPMEHDREDSMEDMIGGIPPSINVGHMSGRYHHHHHHLSKMSTGYSSALLENDQNLLEGMMIGNGSVMNTSTTGTTPGAMGASNSKAELSFVPTMTHSSNTCKRTLSSLYWNDEDLAGTSSSNKRLNLESGDNNHGSVVRTDQDNGTATSIVTLLNQLPQTPSLHQQSMLGSIGDGLLRTTYQIPGMNWNLEAVVRV 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1730g00001 379 Gene3D NAC domain 25 182 IPR036093 GO:0003677|GO:0006355
Vium1730g00001 379 MobiDBLite consensus disorder prediction 1 21 - -
Vium1730g00001 379 PANTHER NAC TRANSCRIPTION FACTOR 56 16 224 - -
Vium1730g00001 379 FunFam NAC transcription factor 56 25 182 - -
Vium1730g00001 379 MobiDBLite consensus disorder prediction 302 325 - -
Vium1730g00001 379 ProSiteProfiles NAC domain profile. 16 177 IPR003441 GO:0003677|GO:0006355
Vium1730g00001 379 MobiDBLite consensus disorder prediction 1 18 - -
Vium1730g00001 379 SUPERFAMILY NAC domain 10 177 IPR036093 GO:0003677|GO:0006355
Vium1730g00001 379 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1730g00001 Vium-Chr1730 20963 23150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1730g00001 1 371 NAC Transcription Factor Family AT3G15510 53.627 6.78e-127 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium1730g00001 NAM 3.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1730g00001 - - vra:106763825 770