Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium172g00001 ATGGCAACTCTAAGTTCCCGTAGATTCACGTACGATGTGTTCCTCAGCTTTAGAGGGGAAGACACGCGTTATGGTTTCACCGGTAATCTCTACAGAGCTCTCTGTGACAGGGGACTTCACACTTTCATCGATGATGACAAACTTCAAAGCGGAGACGAAATCACACCAGCACTTCTGAAAGCAATTGAAGAGTCTAGGATTGCCATCGTTGTACTCTCTCACAACTATGCTTCTTCCTCCTTCTGCTTGGATGAACTCACAACAATCCTTCACTGCCAAAGTGAAGGGCTGTTGGTTATACCAGTGTTTTATAAGGTGGATCCTTCTTATGTCAGACACCAGAAAGGTACCTACGAAGAAGCATTGGCTAAGCATCAAAAGAGGTTCAAAGCGCAGAAGGAGAAGTTACAGAAATGGAAGATTGCTCTGCGTCAAGTTGCTGACTTCTCTGGCTATCACTTCAAAGATGGGCATGAATACCAGTACGAGTTTACTGAGAGAATTGTTGAACGGGTTTCCAGGGAGATTAATCGTGCTCCTTTACATGTTGCGGATTACCCAGTTGGCCTACTGTCACAGGTGCTGCAAGTCAAGAAACTTTTGGATGTTGGATCGGATGATGTTGTCCACATGATAGGGATCCATGGAATGGGTGGGTTAGGAAAAACAACACTTTCTCTAGCAGTTTATAATTTGATTGCTGATGATTTTGATAGTTCATGTTTTCTTCAAAATGTAAGAGAAGAATCAAATCAAAAACACCTCCAGACCGTCCTTCTTTCTGAACTACTTGGAGAGAAGGACATCAACTTAGCAAGTGTGCAAAGAGGAATTTCAGTGATACAACAAAGGCTTGGTAGAAAGAAAGTTCTCTTGATTCTAGACGATGTTGACAACAGAAAGCAGTTACAGGCATTTGCTGGAAGATCTGATTGGTTTGCTCCTGGCAGCAGAGTTATCGTTACCACTCGGGACGAACAGCTGCTAAAATGTCATGAGATTGAAAGAACTTATGAGGTGAAGGAATTGAATAAGAATGATTCTCTTCAATTGCTTATATGGAATGCTTTCAAAAGGGAAAAGGTCGATCCAAGTTACAAGGACGTGTTGAAACGTGTAGTGACTTATGCTTCTGGTCTTCCATTGGCTTTAGAAGTAATAGGTTCCAACTTGGTTGGAAAAAGTGTAGAAGAATGGGAGTCTGCGATTGAACATTACAAAAGAATTCCAAACGGTGAAATTATAGAGATACTTAAAGTAAGCTTTGATGCTTTGGGGGAAGAAGAAAAGAATGTCTTTCTTGACATCGCCTGTTGCTTGAAAGGAAGTAGTTTGAAAGAAGTTGAACAAATACTTGGTGTTCTTTATGATAACAACATGAAACATCACATTGGGGTGTTGGTGAAAAAATCTCTCATAAAGGTTGGGCGTGAAAGGTTTAATGTAATTGAAATGCACGACTTGATTGAGGACATGGGTAGACAAATTGACCTGCAAAAGTCACCCAAAGAGGTAGGGAAGCGCAGGAGATTATGGTTAGGGAAAGATATCATTCATGTTTTAAAAGACAACAAGGGAACTAGCGAAACTGAAATCATATGCCTGGATTTGTCTATATCTGAAAAAGAAGAAACGATAGAATGGAATGCCAACGCCTTCAGAAGGATGAAAAACCTTAAAATACTTATCATTAGAAATGGTAAATTTTACAAAGGTCCCAATTATTTTCCGGAAAGTTTGAGAGTACTGGAATGGCATGGATACCCTTCAAATTGTTTACCATCAAATTTTGATCCGAACAAGCTTGTGACATGCAAGTTACCTCACAGTTATTTTACGTCATTTGGATTCCTTGGCTCATCAAAGAAGTTCGAGAATCTAACGGTCTTGAATTTTGACCGGTGCAAATTTTTAACACAGACACCCGATATGTCTGATCTCGGAAATTTAGAGGAAGTTTCATTTAAAGATTGTGAGAGTTTAGTTGAAGTTCACGACTCAGTTGGTTTTATGAGTAAACTTAAAATATTGAATGCGGAAGGTTGCATCAAGCTTATGAGTTTTCCACCTCTCAACTTGCCCACTCTTGAAAGACTAGAACTTTCATATTGTTCGAATCTTGAGAAATTTCCAGAAATACTAGGAAAGATGGGAAACATAAGGGTACTTCAATTGGAGGAGCTTCCCATTAAAGAATTGCCACTGTCGTTTCAAAATCTTATTGGACTCGAAGACTTATTCTTGTCATGTGAAATTGTTCACTTACCAAGTAGCATTGCAACGATGCCTAACTTGTTTGACTTTACTGTTACTAATTGCAAGGGGTGGCAATGGGTAAAATCAGAAGATGCTGAAGATAATGTAGGCTCAATGGTTCCTTCAAAGGTAGATTGGTTTTCGGCCTTTTCTTGCAACCTGGATGATGACTTCTTTTCAGTAGGTTTCATGCGGTTGGCACAAGTGCGTAGTTTATTTCTACGGAACAATAACTTCACACAGCTTCCCGAATGCCTCAAAGAATTTCACAACCTCTGCACTCTTGATGTGAGTCATTGCAAGCATCTTCAGGAAATCAGAGGGTTTCCACCAAAATTAAAACTTTTCAAGGCAATAAACTGTATATCCTTGACTTCCTCCAGCTTAAGCATGTTGCTAAATAAGCAACTGCATGAAGCTAGAAAAACTGAGTTCTGGTTTCCAGGAGCAAGTTTTCCAGAGTGGGTTGATCTCCAGAGCAGTGGACCTTCTTGTTCTTTCTGGTTTCGTAATAAGTTTCCTGCCAAAGTTCTTTCTCTTCTTATAGCACCTGTGGGTGATAAAGATGAGTTTGGTTTCATTAGACCTATGGTGTTCATTGATGGCAAAGTTCAAGAATCACGAGCCTTTTATTTCAAGGAGATAGAGAGGATGTTTGAATTCGATCAAACATACCTTTTTGATCTACAAAAGCTACCTACCTATAGTAATTTGTTTGAACAACCTTTACAAAAGGAATGGAAGCATGTGAAGGTTACATATGAAGGTGTGATAGAGTCCTCAATTGTTAAAGCAACAGGAATTCATGTATTCAAAAAGGAAAACAGCATGATGGAAGACATTCGGTTTGATGATCCTTATACCAACAACAAATTAGACAAAGATCTCAACGCTTCTCAATCACAAAACCACTTGTTAAGAACCATAGGTTTCTTCATGTGCAAATTTTTCATAGGCCTTTTTCTTTTTTCTTGTTGTGCTTTTATTTTTTACTTTATTTACCGGCCTTAG 3267 0.3912 MATLSSRRFTYDVFLSFRGEDTRYGFTGNLYRALCDRGLHTFIDDDKLQSGDEITPALLKAIEESRIAIVVLSHNYASSSFCLDELTTILHCQSEGLLVIPVFYKVDPSYVRHQKGTYEEALAKHQKRFKAQKEKLQKWKIALRQVADFSGYHFKDGHEYQYEFTERIVERVSREINRAPLHVADYPVGLLSQVLQVKKLLDVGSDDVVHMIGIHGMGGLGKTTLSLAVYNLIADDFDSSCFLQNVREESNQKHLQTVLLSELLGEKDINLASVQRGISVIQQRLGRKKVLLILDDVDNRKQLQAFAGRSDWFAPGSRVIVTTRDEQLLKCHEIERTYEVKELNKNDSLQLLIWNAFKREKVDPSYKDVLKRVVTYASGLPLALEVIGSNLVGKSVEEWESAIEHYKRIPNGEIIEILKVSFDALGEEEKNVFLDIACCLKGSSLKEVEQILGVLYDNNMKHHIGVLVKKSLIKVGRERFNVIEMHDLIEDMGRQIDLQKSPKEVGKRRRLWLGKDIIHVLKDNKGTSETEIICLDLSISEKEETIEWNANAFRRMKNLKILIIRNGKFYKGPNYFPESLRVLEWHGYPSNCLPSNFDPNKLVTCKLPHSYFTSFGFLGSSKKFENLTVLNFDRCKFLTQTPDMSDLGNLEEVSFKDCESLVEVHDSVGFMSKLKILNAEGCIKLMSFPPLNLPTLERLELSYCSNLEKFPEILGKMGNIRVLQLEELPIKELPLSFQNLIGLEDLFLSCEIVHLPSSIATMPNLFDFTVTNCKGWQWVKSEDAEDNVGSMVPSKVDWFSAFSCNLDDDFFSVGFMRLAQVRSLFLRNNNFTQLPECLKEFHNLCTLDVSHCKHLQEIRGFPPKLKLFKAINCISLTSSSLSMLLNKQLHEARKTEFWFPGASFPEWVDLQSSGPSCSFWFRNKFPAKVLSLLIAPVGDKDEFGFIRPMVFIDGKVQESRAFYFKEIERMFEFDQTYLFDLQKLPTYSNLFEQPLQKEWKHVKVTYEGVIESSIVKATGIHVFKKENSMMEDIRFDDPYTNNKLDKDLNASQSQNHLLRTIGFFMCKFFIGLFLFSCCAFIFYFIYRP 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium172g00001 1088 Pfam TIR domain 11 176 IPR000157 GO:0007165
Vium172g00001 1088 SUPERFAMILY L domain-like 547 886 - -
Vium172g00001 1088 Gene3D Ribonuclease Inhibitor 497 790 IPR032675 -
Vium172g00001 1088 PRINTS Disease resistance protein signature 691 707 - -
Vium172g00001 1088 PRINTS Disease resistance protein signature 377 391 - -
Vium172g00001 1088 PRINTS Disease resistance protein signature 211 226 - -
Vium172g00001 1088 PRINTS Disease resistance protein signature 284 298 - -
Vium172g00001 1088 ProSiteProfiles TIR domain profile. 9 176 IPR000157 GO:0007165
Vium172g00001 1088 Gene3D Ribonuclease Inhibitor 792 898 IPR032675 -
Vium172g00001 1088 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 178 - -
Vium172g00001 1088 Pfam NB-ARC domain 196 409 IPR002182 GO:0043531
Vium172g00001 1088 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 873 IPR044974 GO:0006952
Vium172g00001 1088 SMART till_3 10 149 IPR000157 GO:0007165
Vium172g00001 1088 Gene3D - 342 426 IPR042197 -
Vium172g00001 1088 SUPERFAMILY "Winged helix" DNA-binding domain 413 522 IPR036390 -
Vium172g00001 1088 Gene3D - 178 337 IPR027417 -
Vium172g00001 1088 Coils Coil 122 142 - -
Vium172g00001 1088 Gene3D - 9 177 IPR035897 -
Vium172g00001 1088 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 436 IPR027417 -
Vium172g00001 1088 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 152 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium172g00001 Vium-Chr172 10316 17198 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium172g00001 11 773 WRKY Transcription Factor Family AT4G12020 30.127 2.67e-76 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium172g00001 - - var:108344036 1866.28