Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1725g00008 ATGGCGGCGGCGTCGCGGCGGCTGCGGGACCTCCAATCACAGACGGCGAACAAGATCTGCGTTGACTGCACCCAGAAGAACCCGCAGTGGGCCTCCGTCTCGTACGGCGTCTTCATGTGTTTGGAGTGCTCCGGCAAGCACCGTGGCTTGGGCGTTCACATCTCCTTCGTCCGATCTGTCACCATGGACTCCTGGTCCGAAGTCCAGATCAAGAAAATGGAAGCTGGCGGCAACGATAAGCTCAACGCCTTCCTCGCTCAGTACTCCATCCCCAAGGAGACAGACATCGTTACTAAATACAACACCAACGCCGCCGCCGTCTACCGCGATCGGATCCAGGCCATCGCCGACGGTCGTCCCTGGCGCGATCCGCCGGTAGTGAAGGAAAACCTCGTAGCAGCCAAATGCATTCTTAATTACGATGAATATGGAAATGAAAATAATTATATTCTAAAAGAGTATCTTTAG 468 0.547 MAAASRRLRDLQSQTANKICVDCTQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEVQIKKMEAGGNDKLNAFLAQYSIPKETDIVTKYNTNAAAVYRDRIQAIADGRPWRDPPVVKENLVAAKCILNYDEYGNENNYILKEYL 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1725g00008 155 CDD ArfGap_ArfGap1 4 118 - -
Vium1725g00008 155 Gene3D Arf GTPase activating protein 1 127 IPR038508 -
Vium1725g00008 155 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 133 IPR044519 GO:0005096|GO:0016192
Vium1725g00008 155 Pfam Putative GTPase activating protein for Arf 6 108 IPR001164 GO:0005096
Vium1725g00008 155 SUPERFAMILY ArfGap/RecO-like zinc finger 6 113 IPR037278 -
Vium1725g00008 155 ProSiteProfiles ARF GTPase-activating proteins domain profile. 5 111 IPR001164 GO:0005096
Vium1725g00008 155 SMART arf_gap_3 5 121 IPR001164 GO:0005096
Vium1725g00008 155 PRINTS HIV Rev interacting protein signature 36 53 IPR001164 GO:0005096
Vium1725g00008 155 PRINTS HIV Rev interacting protein signature 17 36 IPR001164 GO:0005096
Vium1725g00008 155 PRINTS HIV Rev interacting protein signature 57 78 IPR001164 GO:0005096
Vium1725g00008 155 FunFam ADP-ribosylation factor GTPase-activating protein 1 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1725g00008 Vium-Chr1725 78460 80888 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1725g00008 2 92 C2H2 Transcription Factor Family AT4G21160 46.739 1.10e-24 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1725g00008 K12492 - vum:124827671 320.472