Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1725g00007 ATGGCGGCGGCGTCGCGGCGGCTGCGGGACCTCCAATCACAGACGGCGAACAAGATCTGCGTTGACTGCACCCAGAAGAACCCGCAGTGGGCCTCCGTCTCGTACGGCGTCTTCATGTGTTTGGAGTGCTCCGGCAAGCACCGTGGCTTGGGCGTTCACATCTCCTTCGTCCGATCTGTCACCATGGACTCCTGGTCCGAAGTCCAGATCAAGAAAATGGAAGCTGGCGGCAACGATAAGCTCAACGCCTTCCTCGCTCAGTACTCCATCCCCAAGGAGACAGACATCGTTACTAAATACAACACCAACGCCGCCGCCGTCTACCGCGATCGGATCCAGGCCATCGCCGACGGTCGTCCCTGGCGCGATCCGCCGGTAGTGAAGGAAAACCTCGTAGCAGGCAAGGGGAAGCCGCCGCTGACGCAGACGCGAAGAGCTAATGAGGGGGGATGGGACGATTGGGACAACGGGGGGAGTTCGGCGGACATCCGGAGCAGGTCAACTGGGGACTTCAGGAGCTTGAACGGCGCGGGTGTGCCGGCGAGGTCTAGGTCGACGGAGGACATCACGCGGTCGCAGCTTGAGGCCTCGGCGGCGAACAAGGAAAGCTTCTTCGCGAGGAAGATGGCGGAGAACGATTCGCGGCCTGAGGGGCTTCCGCCGTCGCAGGGAGGGAAGTACGTAGGGTTCGGGTCCAGTCCGCCGCCTCAGCGGAGGAACGATGCTCAAAACGATTATTTATCTGTCGTTTCGCAGGGTATTGGGAAATTATCTTTGGTTGCTGCCTCTGCTGCTCAGTCTGCGGCTAATGTTGTTCAGGCGGGCACGAAGGAGATCACTTCAAAGGTCAAGGAAGGTGGTTATGATCACAAGGTTAATGAAACTGTCACTGTTGTCACTCAGAAGACATCAGAGATTGGACAGAGGACTTGGGGCATAATGAAAGGAGTTATGGCCATTGCCTCCCAGAAGATCGAGGAGTACACTAAAGATGATACAAACTGGAAGACTGATAACTGGCAACGAAATGAGAGTGATAGAAATGGTTATTATCAGGATTTTAACCAACAGAACAAAGGCTCGAATTCTGCTCCTGGAAGAGAACAATCTTCATCAGGGCAATATAAAACTTATAGCTCAAGCTCTTTGGATGATTGGGATCACCAAGGTAGCAGGAAGCAAGAACCAGCTAAAGGATCAACTCCCTATTCATCAGGTGGGCAGTCTAGCACCTACAACTCAAGCTCTTGGGATGATTGGGAACAAACAGATTCTAGGAAGCAAGAACCAGCTAAAGGATCAGCTCCTCATAATAATGATGATTGGGCTGGCTGGGATAATGCCAAAGATGATGGATTTGATAGTTTGTACCAAGGTGCGTCTAATAAGAAAGGTCTTGGTCATAATGGAAAATCAGATGGCACTTGGACAGAGGGAGGCTTTCTCTAA 1449 0.5286 MAAASRRLRDLQSQTANKICVDCTQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEVQIKKMEAGGNDKLNAFLAQYSIPKETDIVTKYNTNAAAVYRDRIQAIADGRPWRDPPVVKENLVAGKGKPPLTQTRRANEGGWDDWDNGGSSADIRSRSTGDFRSLNGAGVPARSRSTEDITRSQLEASAANKESFFARKMAENDSRPEGLPPSQGGKYVGFGSSPPPQRRNDAQNDYLSVVSQGIGKLSLVAASAAQSAANVVQAGTKEITSKVKEGGYDHKVNETVTVVTQKTSEIGQRTWGIMKGVMAIASQKIEEYTKDDTNWKTDNWQRNESDRNGYYQDFNQQNKGSNSAPGREQSSSGQYKTYSSSSLDDWDHQGSRKQEPAKGSTPYSSGGQSSTYNSSSWDDWEQTDSRKQEPAKGSAPHNNDDWAGWDNAKDDGFDSLYQGASNKKGLGHNGKSDGTWTEGGFL 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1725g00007 482 CDD ArfGap_ArfGap1 4 118 - -
Vium1725g00007 482 MobiDBLite consensus disorder prediction 335 482 - -
Vium1725g00007 482 Pfam Putative GTPase activating protein for Arf 6 106 IPR001164 GO:0005096
Vium1725g00007 482 SMART arf_gap_3 5 121 IPR001164 GO:0005096
Vium1725g00007 482 MobiDBLite consensus disorder prediction 344 385 - -
Vium1725g00007 482 MobiDBLite consensus disorder prediction 129 197 - -
Vium1725g00007 482 MobiDBLite consensus disorder prediction 420 434 - -
Vium1725g00007 482 SUPERFAMILY ArfGap/RecO-like zinc finger 6 112 IPR037278 -
Vium1725g00007 482 FunFam ADP-ribosylation factor GTPase-activating protein 1 130 - -
Vium1725g00007 482 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 399 IPR044519 GO:0005096|GO:0016192
Vium1725g00007 482 MobiDBLite consensus disorder prediction 210 242 - -
Vium1725g00007 482 ProSiteProfiles ARF GTPase-activating proteins domain profile. 5 111 IPR001164 GO:0005096
Vium1725g00007 482 PRINTS HIV Rev interacting protein signature 57 78 IPR001164 GO:0005096
Vium1725g00007 482 PRINTS HIV Rev interacting protein signature 17 36 IPR001164 GO:0005096
Vium1725g00007 482 PRINTS HIV Rev interacting protein signature 36 53 IPR001164 GO:0005096
Vium1725g00007 482 MobiDBLite consensus disorder prediction 395 419 - -
Vium1725g00007 482 Gene3D Arf GTPase activating protein 1 124 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1725g00007 Vium-Chr1725 74397 78390 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1725g00007 6 92 C2H2 Transcription Factor Family AT4G21160 48.864 2.87e-22 95.9