Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1722g00002 ATGTCCCGGCCATCCGACCTCAACTCTCGGTGGTCCGGCCTCAAGCTCTGGGCCATTCGGCCTCAGCCTCCTCGGCCTCAACTTCTCGGCTTCTTCGGCCTCAACTCAGTTTCCAAAGGCCTCAACCGTTCAGCCTCCTCGGCCTCAACTTGGCCTCCAAAGGCCTCGACCATTCGGCCTTACTTCAGGCTCAACCTCTCGGCCTCCAAAGGTCTCGACCGTTTGGCTTCTTCGGCCTCAACTTGGCCTCCAAAGGCCTCAACTTCTCGACTTCCTCGGCCTCAACTTGGCCTCCAAAGGCCTTACCTTCTCGGCCTCGTCTGCCTCAACCTCTGGGCTGCCAAAGGCCTCGACCGTTCGGCCATCCGTGGCCTCAAGTACTTTGCCAAATTTGGCATCAAGTGTTCGGTCATTCGACCTCATAGCTGTTTTTCTTCAAAGGAATTCCGGCCGGCCTCCCCGAAGGTCGGCAATTGTGGATCTTCAATAAAGATATCCCGACCGGCCACACAGATAGTGGGCGACCATGGATCTTCACGACTTGTTACTTGTAAGGATCAATTCAACATTCCTCCAGCTCCCAACGTCCGTCCGCTTGGAGTAACGTTCGCCTGGTCTTCAACCCGAAGAGTGATCTTTGATGCCGTTAGCTGCGGCGGCACCTCCCGCTACCGCTATCGCCAGTGTGGTGGTGGCGAAGGAAACGTTGGTGACTTTAGCTTGGTGGCTAGCCATCTAGAGAAGGAGGAGAGGTCAGAGAAGAGGTCGGAGAAGTTGTCGGATTTGCTGAACGCGGTGGAGACGAAAACAGATGCGGAGGCGGAGAGGAAAGAGGAGGCATTGGCGAAGCTGAAGCGAGTGGTGAAGGAGTTGCGCGAAGAAGACCTCTCGATGCGAAGAATTGCGGCGGAGAGAGTGAGGTCACTGGCGAAGGAAGATGTCGAAGCGAGAGCGAATCTCGCAGTGCTCGGAGTAATTCCTCCTCTCGTCGAAATGCTCGATTCGGAAGACGCTCATACAACTCGTTCGCTCTATGCTTTGCTCAATCTCGGAATCAGTAACAATGCAAACAAAGCGACTGTAGTGAAAATCGACACTGTACACAAGATGCTAAAACTAATTGAATCAAGTGATTCAAATTTGTCTGTGGCCGAAGTGATTGTTTCGAATTTCCTTGGATTGAGTGCTTTGGATTCAAATAAACCCATAGTTGGTTCCTCCGGTGCAATACCATTCCTTGTTAGCACCCTAAAAAGTTTAGAGGCTAGTAAAACCGTACCACAATCCCAATGGCAAGTGAAGCAAGATGCTCTGCGCGCTTTGTACAATCTTTCAATATGATTGTACAACCTTTTGGTTATTCTAGAGACTGATTTGGTTTGGTTTTTAGTTAGCTCGGAAGAGAGCGTCCAGAATATTTGA 1422 0.5141 MSRPSDLNSRWSGLKLWAIRPQPPRPQLLGFFGLNSVSKGLNRSASSASTWPPKASTIRPYFRLNLSASKGLDRLASSASTWPPKASTSRLPRPQLGLQRPYLLGLVCLNLWAAKGLDRSAIRGLKYFAKFGIKCSVIRPHSCFSSKEFRPASPKVGNCGSSIKISRPATQIVGDHGSSRLVTCKDQFNIPPAPNVRPLGVTFAWSSTRRVIFDAVSCGGTSRYRYRQCGGGEGNVGDFSLVASHLEKEERSEKRSEKLSDLLNAVETKTDAEAERKEEALAKLKRVVKELREEDLSMRRIAAERVRSLAKEDVEARANLAVLGVIPPLVEMLDSEDAHTTRSLYALLNLGISNNANKATVVKIDTVHKMLKLIESSDSNLSVAEVIVSNFLGLSALDSNKPIVGSSGAIPFLVSTLKSLEASKTVPQSQWQVKQDALRALYNLSIXLYNLLVILETDLVWFLVSSEESVQNI 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1722g00002 473 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 204 466 - -
Vium1722g00002 473 SMART arm_5 397 446 IPR000225 GO:0005515
Vium1722g00002 473 SMART arm_5 354 396 IPR000225 GO:0005515
Vium1722g00002 473 SMART arm_5 313 352 IPR000225 GO:0005515
Vium1722g00002 473 Coils Coil 274 294 - -
Vium1722g00002 473 SUPERFAMILY ARM repeat 283 457 IPR016024 -
Vium1722g00002 473 Gene3D - 243 471 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1722g00002 Vium-Chr1722 26740 31119 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1722g00002 275 460 U-box Gene Family AT1G67530 32.461 1.25e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1722g00002 - - vum:124827669 896.73