Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1719g00023 ATGAGCAGTACCATTCTCATGACCTTCCTCACAGCCATTGCTTTTCTGGCACAATCCTTCCAAAACTACATCATCCGGCATTCTGGATATCCTGCTGCAGTGAACGAAAACGAAGATCACGAAAGTGATTATTGTTCAGTGTGTCTGAGCCAAATCTGTAAAGGGGAAAAAGTTAGGTCTCTTCCAGTATGCAATCACAGGTACCATGCTGATTGTATAGGTGCTTGGCTTAAGAACAATACCACATGCCCTCTTTGCAGGAACAAAATCACTGATCACAGCCTCCAAAAGCATAAACAGGTGAAGAACTTAGCAGAATCTCTGTTTAATCTTATGCAGAGTTTCACAGATCTGTTGGTAGCTGTTCTCTACATGGTACTTCCATCCACCGTCACTCAGAGTTTCCCTTTGGTTCACTGA 420 0.431 MSSTILMTFLTAIAFLAQSFQNYIIRHSGYPAAVNENEDHESDYCSVCLSQICKGEKVRSLPVCNHRYHADCIGAWLKNNTTCPLCRNKITDHSLQKHKQVKNLAESLFNLMQSFTDLLVAVLYMVLPSTVTQSFPLVH 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1719g00023 139 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 94 IPR013083 -
Vium1719g00023 139 PANTHER RING-H2 FINGER PROTEIN ATL16 36 103 IPR044600 GO:0016567|GO:0016740
Vium1719g00023 139 SUPERFAMILY RING/U-box 31 92 - -
Vium1719g00023 139 CDD RING-H2_PA-TM-RING 45 87 - -
Vium1719g00023 139 SMART ring_2 45 86 IPR001841 -
Vium1719g00023 139 Pfam Ring finger domain 44 87 IPR001841 -
Vium1719g00023 139 ProSiteProfiles Zinc finger RING-type profile. 45 87 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1719g00023 Vium-Chr1719 191233 192001 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1719g00023 45 90 C3H Transcription Factor Family AT1G53820 54.348 2.24e-15 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1719g00023 - - gmx:100500375 225.713