Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium1719g00023 | ATGAGCAGTACCATTCTCATGACCTTCCTCACAGCCATTGCTTTTCTGGCACAATCCTTCCAAAACTACATCATCCGGCATTCTGGATATCCTGCTGCAGTGAACGAAAACGAAGATCACGAAAGTGATTATTGTTCAGTGTGTCTGAGCCAAATCTGTAAAGGGGAAAAAGTTAGGTCTCTTCCAGTATGCAATCACAGGTACCATGCTGATTGTATAGGTGCTTGGCTTAAGAACAATACCACATGCCCTCTTTGCAGGAACAAAATCACTGATCACAGCCTCCAAAAGCATAAACAGGTGAAGAACTTAGCAGAATCTCTGTTTAATCTTATGCAGAGTTTCACAGATCTGTTGGTAGCTGTTCTCTACATGGTACTTCCATCCACCGTCACTCAGAGTTTCCCTTTGGTTCACTGA | 420 | 0.431 | MSSTILMTFLTAIAFLAQSFQNYIIRHSGYPAAVNENEDHESDYCSVCLSQICKGEKVRSLPVCNHRYHADCIGAWLKNNTTCPLCRNKITDHSLQKHKQVKNLAESLFNLMQSFTDLLVAVLYMVLPSTVTQSFPLVH | 139 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium1719g00023 | 139 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 17 | 94 | IPR013083 | - | |
Vium1719g00023 | 139 | PANTHER | RING-H2 FINGER PROTEIN ATL16 | 36 | 103 | IPR044600 | GO:0016567|GO:0016740 | |
Vium1719g00023 | 139 | SUPERFAMILY | RING/U-box | 31 | 92 | - | - | |
Vium1719g00023 | 139 | CDD | RING-H2_PA-TM-RING | 45 | 87 | - | - | |
Vium1719g00023 | 139 | SMART | ring_2 | 45 | 86 | IPR001841 | - | |
Vium1719g00023 | 139 | Pfam | Ring finger domain | 44 | 87 | IPR001841 | - | |
Vium1719g00023 | 139 | ProSiteProfiles | Zinc finger RING-type profile. | 45 | 87 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium1719g00023 | Vium-Chr1719 | 191233 | 192001 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium1719g00023 | 45 | 90 | C3H Transcription Factor Family | AT1G53820 | 54.348 | 2.24e-15 | 69.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium1719g00023 | - | - | gmx:100500375 | 225.713 |