Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1719g00020 ATGGCGATTGAACACGAAGACGATCTCAAGGACGAGAAGAACCCTCGACCGCTAGATGAGGATGACATCGCCCTCCTCAAAACCTACGGTTTGGGACCTTACTCCACAAGCATAAAAAAGGTAGAGAAGGAAATCAAAGACATGGCTAAGAAAGTGAATGACTTGTGTGGAATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGGTGGCACGATGCACCAAGATTATAAATCCAAACTCTGAAGATGCTAAATACGTTATCAATGTGAAGCAGATTGCCAAGTTTGTTGTTGGGCTGGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGGATGCGTGTTGGGGTTGATAGAAACAAATATCAGATTCAGATACCTTTGCCTCCAAAAATTGATCCAAGCGTCACAATGATGACAGTTGAAGAGAAGCCAGATGTGACATATAATGATGTTGGTGGATGTAAAGAGCAGATTGAAAAGATGCGTGAGGTTGTTGAACTTCCTATGCTTCATCCTGAGAAATTTGTCAAGCTTGGGATTGATCCTCCAAAGGGTGTTCTTTGTTATGGTCCCCCAGGAACTGGTAAAACACTTCTGGCCAGGGCTGTGGCTAATAGAACTGATGCTTGTTTTATTAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGCGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGATGGCTCGTTCAAAGAAGGCTTGCATTGTGTTTTTTGATGAAGTTGATGCAATTGGAGGTGCACGATTTGATGATGGTGTTGGTGGTGATAACGAGGTTCAACGCACCATGCTTGAAATTGTGAATCAGCTTGATGGATTTGATGCTCGTGGAAACATCAAAGTTTTGATGGCAACAAACAGGCCTGACACTCTAGATCCGGCATTACTACGACCTGGGCGATTGGACCGTAAAGTTGAATTTGGCCTTCCTGATTTAGAGAGTAGGACACAGATATTCAAGATACACACCAGAACCATGAACTGTGAAAGGGATATCCGATTTGAACTTTTGGCTCGGCTATGCCCAAATTCCACTGGAGCTGATATAAGGAGTGTATGCACGGAAGCTGGAATGTATGCTATCCGTGCCCGGAGGAAGACTGTAACAGAGAAAGACTTCCTTGATGCAGTAAATAAAGTCATCAAAGGATACCAGAAGTTCAGTGCTACTCCCAAATATATGGTCTATAATTGA 1281 0.4379 MAIEHEDDLKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKVEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1719g00020 426 FunFam 26S protease regulatory subunit 7 33 157 - -
Vium1719g00020 426 CDD RecA-like_PAN_like 166 336 - -
Vium1719g00020 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 416 IPR027417 -
Vium1719g00020 426 Gene3D - 158 337 IPR027417 -
Vium1719g00020 426 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 11 412 - -
Vium1719g00020 426 Gene3D - 32 157 IPR012340 -
Vium1719g00020 426 FunFam 26S protease regulatory subunit 7 158 337 - -
Vium1719g00020 426 Pfam AAA+ lid domain 360 403 IPR041569 -
Vium1719g00020 426 Pfam ATPase family associated with various cellular activities (AAA) 205 337 IPR003959 GO:0005524|GO:0016887
Vium1719g00020 426 SMART AAA_5 201 340 IPR003593 GO:0016887
Vium1719g00020 426 FunFam 26S protease regulatory subunit 7 339 410 - -
Vium1719g00020 426 ProSitePatterns AAA-protein family signature. 308 326 IPR003960 GO:0005524|GO:0016887
Vium1719g00020 426 Gene3D - 339 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1719g00020 Vium-Chr1719 163824 167472 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1719g00020 170 391 Calmodulin-binding Proteins AT3G56690 37.220 1.35e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1719g00020 K03061 - gmx:100779787 853.973