Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1719g00019 ATGGTGTTGGATCCAAGGCTGGTGCTGTTAGTGTTCATCAGCACCTGCATTTTGGCCATTGATGGTGACACAGATCCAAATGACGCTGGTGCTCTGAGGGCTATGTTTCAAAGTATGAACTCACCATCTCAGCTAAATTGGAATGGGGCAGATCCTTGTGGACAGTCTTGGCAAGGCATCACTTGCTCTGGCAATCGAGTCACAGAGATTAAGTTACCTGGTCGTTCACTTTCTGGATCTTTGGGTTACCAGCTAGAATCCTTGTCATCGGTTACAAACCTAGACATGAGTAATAATAATCTTGGTGGCTCCATACCGTACCAACTTCCTCCTAGTCTGCAGTACTTAAATCTTGCCAATAATAATTTCAATGGGCAGATCCCTTATTCTCTTTCTCAAAAGGCTTCGCTTATTGTCCTGAATCTCGGTCACAATCAGCTCCAGCAAGCACTTAATGTTGATTTCCAAAAGCTTTCTTCCCTCTCTACATTGGATCTCTCATTCAATTCTTTTACAGGTGACCTGCCTCAGACTTTGAGCTCACTTTCTAGCATAAGCACCATGTATCTGCAAAACAACCAGTTTACAGGCACCATTAATGTCCTTGCTAATCTTCCTCTGGAAACTCTGAATGTGGGAAATAATCATTTTACAGGCTGGATACCACAACAATTGAATAACATAAACCTGCAAAAGGATGGTAATGATTGGAGCTCAGGACCTGCACCCCCACCTCCTCCTGGGACACCTCCAGTAGTACCAAGAAATCGAAATCATAAATCTGGGGGACATACCCCATCAGATGCTGGCTCAAGTGACGATGGAGGCAAAAAATCTGGTATTGGAGGTGGTGGCATTGCTGGAATAGTAATCTCCATCCTGGTTGTTGCGGCAATAGTGGCATTCTTTCTGGTGAAGAAAAGATCTAAAAAGTCGTCTGGTGATATTGAAAAGCTTGACAATCAACCCTTGGCTCCTCATACTTCACATCATCATGAAATGAATGCCCTGCAAACTTCATCTGTAACTGACTTGAATACATTTGATACACCTACGGCCCCGATAAGTCTTAAACCTCCACCTTTTGATCGCCATAAATCATTTGACGAGGATGAGTTTTCAGTGAAGCCCGCCACTGTCATTAAGCCCACTACAGTGAAGAAGAACGTCACAGCTCCTACAAATGTAAAATCTTATTCTGTAGCTGACCTGCAGATTGCTACTGGAAGCTTCAGTGTGGATCAACTTATTGGTGAGGGGTCTTTTGGACGTGTATATCGAGCTCAATTTGATGATGGAAAGGTTCTTGCTGTTAAGAAGATAGATTCCTCTGTCCTTCCTAATGATTTGTCTGATGATTTTGTGGAACTGGTTTCAAGCATATCCCATTTGCACCATCCCAATGTGACAGAGCTTGTAGGTTATTGTTCAGAGCATGGACAGCACTTACTAGTCTACGAGTTTCATAAAAACGGATCACTGCATGACTTCCTCCACCTACCTGACGACTATAGTAAACCATTGATATGGAATTCACGCGTGAAGATTGCCTTGGGGATTGCACGTGCTTTAGAGTATCTTCATGAAGTTTGTTCACCATCTGTTGTTCATAAGAATATAAAGTCAGCCAACATATTGCTTGATACAGATCTCAATCCTCATCTTTCTGACAGTGGATTGGCAAGCTATATTCCAAATGCAAATCAGGTATTGAACAATAATTCTGGATCTGGGTATGAAGCTCCCGAAGTTGTCATGTCTGGCCAATACACTCTTAAGAGTGATGTCTTTAGTTTTGGGGTTATCATGTTGGAACTTCTTAGTGGACGGAAACCATTTGATAGCTCAAGGCCAAGGTCTGAGCAGGGTTTGGTTCGATGGGCAACACCTCAACTCCATGATATCGATGCTCTGGCTAAAATGGTTGATCCTGCATTAGAAGGACTATACCCTGTGAAGTCTCTTTCTCGATTTGCAGATGTTATTGCTCTTTGTGTTCAGCCGGAGCCGGAATTCCGACCACCTATGTCAGAAGTGGTTCAAGCGCTGGTTCGATTAGTGCAGCGAACTAACATGAGTAAGAGGACGACGTTTGTAACTGATCAAGGAGTATCCAACCGAGGGGGAGATAACCAAGAATCACAAGACATGTAA 2154 0.4322 MVLDPRLVLLVFISTCILAIDGDTDPNDAGALRAMFQSMNSPSQLNWNGADPCGQSWQGITCSGNRVTEIKLPGRSLSGSLGYQLESLSSVTNLDMSNNNLGGSIPYQLPPSLQYLNLANNNFNGQIPYSLSQKASLIVLNLGHNQLQQALNVDFQKLSSLSTLDLSFNSFTGDLPQTLSSLSSISTMYLQNNQFTGTINVLANLPLETLNVGNNHFTGWIPQQLNNINLQKDGNDWSSGPAPPPPPGTPPVVPRNRNHKSGGHTPSDAGSSDDGGKKSGIGGGGIAGIVISILVVAAIVAFFLVKKRSKKSSGDIEKLDNQPLAPHTSHHHEMNALQTSSVTDLNTFDTPTAPISLKPPPFDRHKSFDEDEFSVKPATVIKPTTVKKNVTAPTNVKSYSVADLQIATGSFSVDQLIGEGSFGRVYRAQFDDGKVLAVKKIDSSVLPNDLSDDFVELVSSISHLHHPNVTELVGYCSEHGQHLLVYEFHKNGSLHDFLHLPDDYSKPLIWNSRVKIALGIARALEYLHEVCSPSVVHKNIKSANILLDTDLNPHLSDSGLASYIPNANQVLNNNSGSGYEAPEVVMSGQYTLKSDVFSFGVIMLELLSGRKPFDSSRPRSEQGLVRWATPQLHDIDALAKMVDPALEGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRTNMSKRTTFVTDQGVSNRGGDNQESQDM 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1719g00019 717 MobiDBLite consensus disorder prediction 231 278 - -
Vium1719g00019 717 Gene3D Ribonuclease Inhibitor 28 136 IPR032675 -
Vium1719g00019 717 ProSiteProfiles Protein kinase domain profile. 411 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1719g00019 717 SUPERFAMILY Protein kinase-like (PK-like) 390 683 IPR011009 -
Vium1719g00019 717 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 25 248 - -
Vium1719g00019 717 Gene3D Phosphorylase Kinase; domain 1 374 488 - -
Vium1719g00019 717 Pfam Leucine rich repeat 111 170 IPR001611 GO:0005515
Vium1719g00019 717 CDD STKc_IRAK 417 686 - -
Vium1719g00019 717 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 688 IPR046959 -
Vium1719g00019 717 MobiDBLite consensus disorder prediction 239 253 - -
Vium1719g00019 717 ProSitePatterns Protein kinases ATP-binding region signature. 417 440 IPR017441 GO:0005524
Vium1719g00019 717 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 377 488 - -
Vium1719g00019 717 MobiDBLite consensus disorder prediction 697 717 - -
Vium1719g00019 717 MobiDBLite consensus disorder prediction 312 332 - -
Vium1719g00019 717 Gene3D Ribonuclease Inhibitor 137 238 IPR032675 -
Vium1719g00019 717 Gene3D Transferase(Phosphotransferase) domain 1 490 707 - -
Vium1719g00019 717 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 489 697 - -
Vium1719g00019 717 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Vium1719g00019 717 SUPERFAMILY L domain-like 44 227 - -
Vium1719g00019 717 Pfam Protein tyrosine and serine/threonine kinase 413 683 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1719g00019 Vium-Chr1719 154529 162737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1719g00019 8 716 Strubbelig Receptor Gene Family AT1G53730 64.779 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vium1719g00019 PK_Tyr_Ser-Thr 1.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1719g00019 - - gmx:100780323 1195.65