Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1719g00018 ATGATGACCACCAACACAAATCCCAAAAACAACAACGTTGGAGAATTTGGGGACACCACTCTCACCAAGGTTTTTGTTGGGGGCCTGGCATGGGAGACTCCCAAGGATGCCCTCAGAGACCATTTTGAAAAGTATGGTGAGATCCTTGAAGCTGTCATCATTTCTGATAAGCTTACTGGCAAATCCAAAGGCTATGGCTTTGTGACTTTCAAAGAGGCTGAGGCTGCCAAAAAAGCTTGCGAGGACTCTGCAACTCTTGTTATCAATGGCCGTCGAGCCAACTGCAATCTGGCTTTCTTAGGTGCTCGTCGTCCAAGGTCTTCTTCCACTGCTTCACCACCTCCACACCCACAAGGAGGATCAAACAGTGGAGTGGTGGTGAAGAACAATGCAGCAGGGAATCACGTGCAGCCATATTATCATCCACTCAGAACAACTGCCATGCCCTTCCACAATCACCCTCTTCCTTTCTATGGGTACACTCCAACCTACATTGTGACAGACATAAACTACAATTACAACCAGAAACTGAGCTATGGCAATGGTGGGGCCTACCAGCAGATGTCCCATGTGTACCCTAGGCAGGGGATTGTGGGTGGCAACACAGTAATGCCAGTGTACCCTCTCTATCAGTATCATCATCCAACGGAGACCATTGGCCTACCAGCTCACAACTTTTATCCAACGGCACCCTGGGCCCCATTCACCATCATTTCCAAACCATCCTCTATAATTCCTTATACAGGTACAGTTGGCACGGGTGAGTGCTTTAAAAGGGTTGTCTGA 786 0.4835 MMTTNTNPKNNNVGEFGDTTLTKVFVGGLAWETPKDALRDHFEKYGEILEAVIISDKLTGKSKGYGFVTFKEAEAAKKACEDSATLVINGRRANCNLAFLGARRPRSSSTASPPPHPQGGSNSGVVVKNNAAGNHVQPYYHPLRTTAMPFHNHPLPFYGYTPTYIVTDINYNYNQKLSYGNGGAYQQMSHVYPRQGIVGGNTVMPVYPLYQYHHPTETIGLPAHNFYPTAPWAPFTIISKPSSIIPYTGTVGTGECFKRVV 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1719g00018 261 PANTHER BOULE-RELATED 11 227 - -
Vium1719g00018 261 MobiDBLite consensus disorder prediction 104 128 - -
Vium1719g00018 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 100 IPR000504 GO:0003723
Vium1719g00018 261 Gene3D - 2 112 IPR012677 -
Vium1719g00018 261 SMART rrm1_1 23 96 IPR000504 GO:0003723
Vium1719g00018 261 SUPERFAMILY RNA-binding domain, RBD 18 121 IPR035979 GO:0003676
Vium1719g00018 261 FunFam Putative RNA-binding protein ARP1 16 106 - -
Vium1719g00018 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 91 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1719g00018 Vium-Chr1719 142845 144943 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1719g00018 18 164 C2H2 Transcription Factor Family AT2G19380 31.169 3.47e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1719g00018 - - vra:106778170 515.768