Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1719g00016 ATGACCAACCATCACTTCAAACACTCCATTCTCTCAGTTTTTCTCATGCCATCACCATCTTCATCTTCCTCTGCATATTCCCTTTACAATTCTTACATGGTTTCCAACTTCATGGTCTCTATCATAGTCCCCTTATTCCTCTTCTCCTTGTTTGTTGTTCATGTTTCCTCTTGTAGTCAGATTGATAAACTCTCCCTCTTGGCTTTCTCTGGGAACATATCCACCTCTCCACCTTTTCCTTATCTCAATTGGTCTGATTCTCTTGACTGCTGTGCTTGGGAAGGCATTACTTGTGATGGGGATCTTAGAGTCACACATCTTTTGCTACCTTCTAGAGGCCTCACTGGCTTCATCTCCCCCTCTCTCACAAACCTCTCTTGTCTCTCTCACCTTAATCTCTCCCATAAGAGATTATCTGGTGGTCTCCAGCACCAGCTTTTTTCATTGCTCAGTCACTTGGTGGTTCTTGATTTGAGCTACAATCATCTGTCTGGTGAATTGCCACCTTTTGGGATTGATAACAGTGGCAAAAATAGCAGTGGTGCTGCTATCCAGGAGCTGGATTTGTCCAGCAATTTTTTCAACGGGACACTTCCAAATTCTTTGCTCGAGAACTTGGCAGCTGCTGCAGCTGGAGGAAGTTTGGTGTCTTTGAATGTTAGTAATAACAGCTTCATAGGTCATATTCCCACTTCCCTGTTTTGCATTAATGACCGTAACTCCTCCTCTCTAAGATTCTTGGATTATTCCTCCAATGATTTTGATGGTGCCATTCAGCCTGGACTTGGAGCATGTTCCAAGCTGGAGAGATTTAGAGCAGGCTTCAATTTTCTGTCATGGCCTATTCCAAGTGATCTTTTTGATGCTGTTTCTCTCACAGAAATCTCATTGCCCCTCAATAGACTCACTGGAACAATTGAAGATGGTATAGTTGGCCTTACCAACCTCACAGTTTTGGAGCTCTACTCCAATCATTTCACAGGTTTCATCCCCCGTGAAATTGGTAAACTCTCCAAGTTGGAACGGCTACTCCTTCATGTCAACAATTTGACAGGTACTATGCCCCCGTCTCTGATGAACTGTGTCAATCTTGTGGTCTTGAATTTAAGGGTCAATCTCTTGGAGGGAAATCTCTCTGCATTCAATTTCTCAGGATTCCTCAGCCTTACTACACTTGATCTTGGCAACAATTATTTTATCGGTGGTTTACCACCAACCCTTTATGCATGCAAATCACTTTCAGCTGTGAGGTTTGCATCTAATCAGCTTGAGGGAGAGATTTCTCCCAGGATACTTGAACTAGAGTCTTTGTCTTTCCTATCAATTTCTACTAACAAGTTTAGGAATGTTACTGGGTCTCTGACAATACTCAGGGGTCTCAAAAACCTCAGTACCCTTATGCTCTCCAAGAATTTTTTCAACGAAATGATACCTCAAGATGTGAACATAATAGAGCCAGGTGGATTTCAAAAACTGCAGGTTTTAGGATTTGGTGGTTGTAATTTCACTGGTCAAATACCAGGCTGGCTTGTGAAACTTAAGAAGCTTGAGGCCTTGGACCTGTCCTTTAATCAAATCAGTGGTCCAATTCCTCCATGGTTGGGTAGACTTCCTCAACTTTTCTACATGGACTTGTCTTTTAACCTCCTTACTGGTGTAATTCCAGTAGAGCTCACAGAACTCCCAGCACTGGCATCACAACAGGCAAATGATAAAGTAGAAAGGACTTATCTTGAGCTACCTGTCTTTGCAAATGCAAATAATGTTTCCCTACTGCAATATAATCAGCTTTCAGCCCTCCCCCCAGCAATATATCTGGGAAACAATCACCTTAATGGCAGTATCCCTATTGAGATTGGAAAACTCAAAGCCCTTCTTCAGCTGGACGTGAAAAATAACAGCTTCTCTGGTGATATACCCGTTCAGTTTTCAAACCTGACTAACTTAGAGAAACTAGACCTCTCAGGAAACCAACTATCTGGTGAAATTCCTGAATCCCTTAGAAAATTACATTTCTTGTCTTTTTTCAGTGTAGCCTTCAATAATCTTCAAGGACAGATACCAACTGGTGGTCAATTTGATACTTTCTCCTATTCCAGCTTTGAAGGAAACTCGCAATTGTGCGGTCCAGTCATTCAGCGTTCTTGTTCTCAACAAAATACTTCTACTAATACTACTCCAGCTAGTCACAGCTCAAACAAAAGAATAATGATTGCACTTGTCATTACAGCCAGTTTTGGCTTTGGCTCCTTGATAACAGTGTTGACTCTGTGGATACTGTCCAAGAGAAGAGTCAATCCAGGTGGAGAGCTAGACAAGATTGAAATGGAATCAATTTCTGCCTACTCCAACAATGGAATTCATCCAGAAGTTGACAAGGAGGCTAGCCTGGTGGTATTGTTCTCCAACAAGAATAATGAAACCAAGGACCTCACCATATTTGACATCCTAAAAGCCACTGAAAATTTCAGTCAGGCAAACATAATAGGATGTGGGGGTTTTGGTTTGGTTTATAAAGCAACACTACCAAATGGAACCACAGTTGCCATCAAGAAACTTTCAGGAGACTTGGGCCTCATGGAAAGGGAATTCAAAGCAGAAGTAGAGGCTTTGTCAACAGCACAACATGAGAATCTGGTGGCATTAAAAGGCTATTGTGTGCATGAGGGATTCCGGCTTCTCATGTATACATACATGGAAAATGGAAGCCTTGATTACTGGTTACATGAAAAGCCTGATGGTGCTTCCCAACTTGATTGGCCAACTCGCTTGAAGATTGCACAAGGGGCAAGCTGTGGCTTAGCTTATTTGCATCAGATATGTGAACCACACATAGTGCATCGCGATATAAAGTCAAGCAACATACTCCTTAATGAAAATTTTGAGGCACATGTTGCTGATTTTGGGTTGTCCAGGTTGATTCTTCCATATCATACTCATGTTACCACTGAACTTGTTGGTACATTAGGCTATATTCCCCCTGAGTATGGACAAGCATGGGTGGCTACTCTGAGAGGAGATGTGTACAGCTTGGGTGTTGTCATGCTTGAGCTGCTAACTGGGAGGAGGCCTGTAGATGTATGCAAGCCAAAAATGTCAAGGGAGTTGGTTGGCTGGGTTCAACAAATGAGAATTGAAGGAAAACAAGATCAAGTATTTGACCCTATTCTGAGAGGGAAGGGGTTTGAAGGAGAGATGCTGAAGGTGCTGGATGTGGCTTGCATGTGTGTCAGCCACAATCCTTTCAAGAGACCAAGCATCAGAGAAGTTGTTGAATGGCTGAAGAATGTAGCATCAGACAACCAGCCAGCACAGAAATAA 3321 0.4246 MTNHHFKHSILSVFLMPSPSSSSSAYSLYNSYMVSNFMVSIIVPLFLFSLFVVHVSSCSQIDKLSLLAFSGNISTSPPFPYLNWSDSLDCCAWEGITCDGDLRVTHLLLPSRGLTGFISPSLTNLSCLSHLNLSHKRLSGGLQHQLFSLLSHLVVLDLSYNHLSGELPPFGIDNSGKNSSGAAIQELDLSSNFFNGTLPNSLLENLAAAAAGGSLVSLNVSNNSFIGHIPTSLFCINDRNSSSLRFLDYSSNDFDGAIQPGLGACSKLERFRAGFNFLSWPIPSDLFDAVSLTEISLPLNRLTGTIEDGIVGLTNLTVLELYSNHFTGFIPREIGKLSKLERLLLHVNNLTGTMPPSLMNCVNLVVLNLRVNLLEGNLSAFNFSGFLSLTTLDLGNNYFIGGLPPTLYACKSLSAVRFASNQLEGEISPRILELESLSFLSISTNKFRNVTGSLTILRGLKNLSTLMLSKNFFNEMIPQDVNIIEPGGFQKLQVLGFGGCNFTGQIPGWLVKLKKLEALDLSFNQISGPIPPWLGRLPQLFYMDLSFNLLTGVIPVELTELPALASQQANDKVERTYLELPVFANANNVSLLQYNQLSALPPAIYLGNNHLNGSIPIEIGKLKALLQLDVKNNSFSGDIPVQFSNLTNLEKLDLSGNQLSGEIPESLRKLHFLSFFSVAFNNLQGQIPTGGQFDTFSYSSFEGNSQLCGPVIQRSCSQQNTSTNTTPASHSSNKRIMIALVITASFGFGSLITVLTLWILSKRRVNPGGELDKIEMESISAYSNNGIHPEVDKEASLVVLFSNKNNETKDLTIFDILKATENFSQANIIGCGGFGLVYKATLPNGTTVAIKKLSGDLGLMEREFKAEVEALSTAQHENLVALKGYCVHEGFRLLMYTYMENGSLDYWLHEKPDGASQLDWPTRLKIAQGASCGLAYLHQICEPHIVHRDIKSSNILLNENFEAHVADFGLSRLILPYHTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSLGVVMLELLTGRRPVDVCKPKMSRELVGWVQQMRIEGKQDQVFDPILRGKGFEGEMLKVLDVACMCVSHNPFKRPSIREVVEWLKNVASDNQPAQK 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1719g00016 1106 FunFam Tyrosine-sulfated glycopeptide receptor 1 383 721 - -
Vium1719g00016 1106 Gene3D Transferase(Phosphotransferase) domain 1 899 1106 - -
Vium1719g00016 1106 FunFam Leucine-rich repeat receptor-like protein kinase 899 1105 - -
Vium1719g00016 1106 Pfam Leucine rich repeat N-terminal domain 62 99 IPR013210 -
Vium1719g00016 1106 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 283 378 - -
Vium1719g00016 1106 FunFam Leucine-rich repeat receptor protein kinase MSP1 788 898 - -
Vium1719g00016 1106 ProSitePatterns Serine/Threonine protein kinases active-site signature. 945 957 IPR008271 GO:0004672|GO:0006468
Vium1719g00016 1106 Gene3D Ribonuclease Inhibitor 179 284 IPR032675 -
Vium1719g00016 1106 SUPERFAMILY Protein kinase-like (PK-like) 809 1094 IPR011009 -
Vium1719g00016 1106 Gene3D Ribonuclease Inhibitor 61 178 IPR032675 -
Vium1719g00016 1106 PRINTS Leucine-rich repeat signature 646 659 - -
Vium1719g00016 1106 PRINTS Leucine-rich repeat signature 153 166 - -
Vium1719g00016 1106 Gene3D Ribonuclease Inhibitor 285 380 IPR032675 -
Vium1719g00016 1106 Pfam Leucine Rich repeat 514 528 IPR001611 GO:0005515
Vium1719g00016 1106 Pfam Leucine Rich repeat 151 166 IPR001611 GO:0005515
Vium1719g00016 1106 Gene3D Phosphorylase Kinase; domain 1 786 898 - -
Vium1719g00016 1106 ProSiteProfiles Protein kinase domain profile. 823 1094 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1719g00016 1106 Pfam Leucine Rich Repeat 648 670 IPR001611 GO:0005515
Vium1719g00016 1106 Pfam Leucine Rich Repeat 388 407 IPR001611 GO:0005515
Vium1719g00016 1106 SUPERFAMILY L domain-like 488 717 - -
Vium1719g00016 1106 ProSitePatterns Protein kinases ATP-binding region signature. 829 852 IPR017441 GO:0005524
Vium1719g00016 1106 Pfam Leucine rich repeat 291 350 IPR001611 GO:0005515
Vium1719g00016 1106 SUPERFAMILY L domain-like 235 566 - -
Vium1719g00016 1106 Pfam Protein kinase domain 824 1092 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1719g00016 1106 SMART LRR_typ_2 646 670 IPR003591 -
Vium1719g00016 1106 SMART LRR_typ_2 313 337 IPR003591 -
Vium1719g00016 1106 SMART LRR_typ_2 386 410 IPR003591 -
Vium1719g00016 1106 SMART LRR_typ_2 513 537 IPR003591 -
Vium1719g00016 1106 SMART LRR_typ_2 150 174 IPR003591 -
Vium1719g00016 1106 SMART LRR_typ_2 434 459 IPR003591 -
Vium1719g00016 1106 SMART serkin_6 823 1094 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1719g00016 1106 SUPERFAMILY L domain-like 87 305 - -
Vium1719g00016 1106 ProSiteProfiles Leucine-rich repeat profile. 648 670 IPR001611 GO:0005515
Vium1719g00016 1106 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 459 1097 - -
Vium1719g00016 1106 Gene3D Ribonuclease Inhibitor 381 725 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1719g00016 Vium-Chr1719 103667 107448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1719g00016 45 754 Miscellaneous Gene Families AT1G17240 49.721 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vium1719g00016 Pkinase 1.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1719g00016 - - gmx:100781943 1848.17