Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1719g00007 ATGGAGAACATAGTTTCCATACTTGATCACATGCCTGTGGGATTCAGATTCCGTCCCACAGACGAGGAGCTTGTCAGCTATTACCTCAAACACAAGTTGCTCGGTGATGATTTCTCTGTTCAGGTCATTCCAGAGATCGACCTTTGCAGAGTGGAACCTTGGGACGTGCCAGCGAAGTCTGTGATCAAATCCGATGACCCAGAGTGGTTTTTCTTCAGTTCTGTGGATTACAAGTACTCTAATAGTAAAAGGGTCAACAGGACCACCGAACATGGCTTCTGGAAAGCCACCGGAAATGACCGTAAAATTCGGATTGGTGGCACTAACAATGTCATTGGGACAAAGAAGACTCTTGTTTTCCACGAAGGCCGCGTTCCCCGTGGTGTCAAGACCAACTGGGTTATTCATGAATACCATGCTCTTACCTCCCATGAAAGCCAGAGGACTTTCGTTTTATGCCGCTTGATGAAGAAATTTGAGAGAAAACATGAAGGGGGAATTGAGGCACCAAACCTTCCTGACTATGGAAATCCAATACCAGCTGAACAAATTCCATCTGTAGTAGATGTTTCACCTAGAGTGATCGTGGATCCAGACTTTCCAGAAGATATTTTCTTCCCCCCAGAACAACAGTCTCCAGTTGGTATTGATCTGGGAGAATTGTTCCTAAACCCCTCAGCACTCGATGCTTGTTTTGGAAATGAAAGCTCCAATGCGCAAATTCCATTTCGAGATACTGATGATGAAGATGAGTTCGTAAATTCAATATGGGTTGATGATGAAGAGCTTGTCATCAATGAAGAAAGAAGACACTGTTTTGTCAATCGTTCCACCCAACCAAAGTCATTGAGCAGGGTATACAATGCTAGCAGTGGCACAGATGCTGAAGTTGTCTCTAATCTGCATGCCAACATTTGTTCTGGTGAATACTCTGGTGGCATGAGTAGTCTAGATTCTAATCATGAAGCACACAAAGGAAAAAAGGAGAGTATCATTCAAGATGATTTCTGGGCAGTGGAGACATCCTCTTGTGACTCAACTGCAGATGAACATATTGAAATTTCTAGTTCTTCCTCCACTCGTGCAAGATTGGAAAATCGGTGTAATCCAAGACCAGACAACTTCATATTACAAAAAACTGTTGCAGGAAGACCACAAACCCAGAAGAAGGTTTCAAACAATGCAGTATCCCATGTAGAGACAAGGAGGGAATTGGTCACTGTGAAACCAGAGAAAGATCAGAAAAATGCTCAAAATTCTAGTTCAAGGAGGATCCTCAAAACGGGAAGCCATCAATCCTCTGATGTCAATAGCAAAGGTTCTTTCCTTTACATGGAAACGATTTCATCAAACCAAAACCTATTTCCACGTTCAGTATATCTTTTCAATGTTGTCATAGGGATTGTGTTGTTAATAGTCATTAGTTTGGATGTATTATTATCTTAG 1446 0.4219 MENIVSILDHMPVGFRFRPTDEELVSYYLKHKLLGDDFSVQVIPEIDLCRVEPWDVPAKSVIKSDDPEWFFFSSVDYKYSNSKRVNRTTEHGFWKATGNDRKIRIGGTNNVIGTKKTLVFHEGRVPRGVKTNWVIHEYHALTSHESQRTFVLCRLMKKFERKHEGGIEAPNLPDYGNPIPAEQIPSVVDVSPRVIVDPDFPEDIFFPPEQQSPVGIDLGELFLNPSALDACFGNESSNAQIPFRDTDDEDEFVNSIWVDDEELVINEERRHCFVNRSTQPKSLSRVYNASSGTDAEVVSNLHANICSGEYSGGMSSLDSNHEAHKGKKESIIQDDFWAVETSSCDSTADEHIEISSSSSTRARLENRCNPRPDNFILQKTVAGRPQTQKKVSNNAVSHVETRRELVTVKPEKDQKNAQNSSSRRILKTGSHQSSDVNSKGSFLYMETISSNQNLFPRSVYLFNVVIGIVLLIVISLDVLLS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1719g00007 481 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 358 - -
Vium1719g00007 481 MobiDBLite consensus disorder prediction 412 436 - -
Vium1719g00007 481 Pfam No apical meristem (NAM) protein 12 139 IPR003441 GO:0003677|GO:0006355
Vium1719g00007 481 MobiDBLite consensus disorder prediction 409 436 - -
Vium1719g00007 481 SUPERFAMILY NAC domain 8 158 IPR036093 GO:0003677|GO:0006355
Vium1719g00007 481 Gene3D NAC domain 20 162 IPR036093 GO:0003677|GO:0006355
Vium1719g00007 481 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1719g00007 Vium-Chr1719 27355 30633 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1719g00007 8 160 NAC Transcription Factor Family AT3G49530 55.063 7.84e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium1719g00007 NAM 1.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1719g00007 - - gsj:114390609 635.95