Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1719g00006 ATGTCTCATTCAACCTACAAACACAGATTTCAGTGTTCACCAAAATCAATGGGTAAAATTGTTGGTGTCGGTTTCCGTCCTACGGAACAAGAGCTCGTCGATTTCTACCTCAAGCACAAGTTGCTGGCTGATGATTCCCGTGTCGACGTTATCCCTGTCATTGATCTCTGCCAAGTGGAACCTTCCGATGTACCAGGGATGCTTGCAAAATCACCGATACGATTTGGTAACCCAGACTGGTTTTTCTTTAGTCCGGTCGATTTCAAGTATGCAAACAGTAAAAGGGTTAACAGGAAAACCGAGAAAGGATTCTGGAAAGCCACTGGAAAAGACCGTGATATTAGGAGCTGGAACAACAACACACTGATTGCCACAAAGAAGACTCTTGTATACTACACAGGAAGTGTTTCCTGTGGTGTCAAGTCCATCTGGGTTATTCACGAATATCACGCTGTTACCTTTCATGAAAGCAAGAGGTATTTTGTTTTATGCCGCTTGATGAGGAAATCTGGGAAAACCACTGAAGGGGGAACCGATCCAGTAGTCTGTGGTGAAGAGGAGCCCAGTGAACTCAATGTTTCTGACTACGAAAATCAGGCAACATCTAAAGAAATTCCATCTGGAGGTAAGGTTACAGGAGCGGAACCAATCTTTCAGGCTAACTCTCAGTCAGAGACATACGTCTCCCAAATACCACAGTCTTCAACAGAAGAAGCATCATCTTTTCCAGATTATCCATCAAACAATGCCTGTTTTAGAAATGAAAATTGTTTTATGCAAGATGAGTTTCTAAATCGAATTATAGCTGACGAAAATTTAGATATTGACGAAGATAATATCTATACTTTTGTCAATAATTCCATCCGGAAGGATACGAATATTATGGATAGTTCTTCTATTTATAATGAATATTCTAATAACGAGGAATACCATTCATCAAAAAGATTTAAATTATCAGAAGATGTTATTGATGATGCATCATCAAATCAAGAAACAAAGAAGAGTATGATTTTAGATAATTTTTGTGGAATGGAATCATCTTCTTGTGACTCATATCCATATTCAGCTTTAGAGATTAATCATACCGAAACTTCTAGTTCTCAGTCTATTTCATAA 1116 0.3853 MSHSTYKHRFQCSPKSMGKIVGVGFRPTEQELVDFYLKHKLLADDSRVDVIPVIDLCQVEPSDVPGMLAKSPIRFGNPDWFFFSPVDFKYANSKRVNRKTEKGFWKATGKDRDIRSWNNNTLIATKKTLVYYTGSVSCGVKSIWVIHEYHAVTFHESKRYFVLCRLMRKSGKTTEGGTDPVVCGEEEPSELNVSDYENQATSKEIPSGGKVTGAEPIFQANSQSETYVSQIPQSSTEEASSFPDYPSNNACFRNENCFMQDEFLNRIIADENLDIDEDNIYTFVNNSIRKDTNIMDSSSIYNEYSNNEEYHSSKRFKLSEDVIDDASSNQETKKSMILDNFCGMESSSCDSYPYSALEINHTETSSSQSIS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1719g00006 371 MobiDBLite consensus disorder prediction 172 197 - -
Vium1719g00006 371 Pfam No apical meristem (NAM) protein 21 150 IPR003441 GO:0003677|GO:0006355
Vium1719g00006 371 Gene3D NAC domain 28 174 IPR036093 GO:0003677|GO:0006355
Vium1719g00006 371 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 287 - -
Vium1719g00006 371 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Vium1719g00006 371 SUPERFAMILY NAC domain 11 169 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1719g00006 Vium-Chr1719 17661 20120 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1719g00006 21 169 NAC Transcription Factor Family AT4G35580 46.104 1.32e-37 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium1719g00006 NAM 1.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1719g00006 - - var:108346924 715.301