Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1719g00004 ATGGATGTTATAGGATTTGGTTTCAGACCCACAGAAGAAGAACTTGTCGACTATTACCTCAGACACAGGTTGCTGGGTGATGATCCACAAGTCCACGTCATCCCCGACATCGACCTCTGTGAAGTGGAACCTTGGGACGTACCAAGTATGTTATTAGCGGAGTCAGCTGTACCATTCGATCTCCCGGAATGGTTTTTCTTCAGTCCTGTTGATTTCAAGTATTCAAACAGTAAAAGGATTAACAGGACAACCAAGTGTGGCTTCTGGAAACCCACCGGAAAAGATCGTGAGATTAGGAGGTCCGACTCCAACACTCTCATTGCCAAAAAAAAGACTCTCGTTTACTACAAAGGCCGCGTTCCACGTGGTGAGAAGTCCAACTTTGTTATTCATGAATACCATGCTGTTACCTTTCACGAAAGCCAGAGGACTTTCGTTTTGTGTCGCTTGATGAAGAAACCTGGGGGAACAACTGAAGTTGGAGGTGATGAAGGGGAGAGCAGTAGAATCATGGTTTCTGGCTATGAGAATCAGTCAATAGCAGGAGGCATTCCTTCGGTAAGTTGA 567 0.455 MDVIGFGFRPTEEELVDYYLRHRLLGDDPQVHVIPDIDLCEVEPWDVPSMLLAESAVPFDLPEWFFFSPVDFKYSNSKRINRTTKCGFWKPTGKDREIRRSDSNTLIAKKKTLVYYKGRVPRGEKSNFVIHEYHAVTFHESQRTFVLCRLMKKPGGTTEVGGDEGESSRIMVSGYENQSIAGGIPSVS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1719g00004 188 Gene3D NAC domain 11 156 IPR036093 GO:0003677|GO:0006355
Vium1719g00004 188 ProSiteProfiles NAC domain profile. 2 153 IPR003441 GO:0003677|GO:0006355
Vium1719g00004 188 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 156 - -
Vium1719g00004 188 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Vium1719g00004 188 SUPERFAMILY NAC domain 4 153 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1719g00004 Vium-Chr1719 10844 12161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1719g00004 4 154 NAC Transcription Factor Family AT4G35580 50.641 2.67e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium1719g00004 NAM 1.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1719g00004 - - vra:106753224 343.584