Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1719g00002 ATGGAGATTGTAGGAATGGGTTTTCGTCCCACAGATGAAGAACTTGTCGACTTTTACCTCAAACACAAGTTGCTCGATGATGATCCCCTTGTCCATGTCTTGACTGACATAGATCTTTCCGACGTGGAACCTTGGGAAATACCAGAGATGTTAGCAAAATCAGTAATAGCATTCAAAACCTCAGAATGGTTTTTCTTCAGTCCTGTTAATTTGAAGTACTCAAATAGTAAAAGGTTTAAAAGGACAACCAAGAGTGGGTTCTGGAAACCAACGGGAAAACCCCGTGATGTTAGAAAAGGGGACACCAAAACTGACATTGGGACAAAGAAGACTCTTGTTTTCCAAAGTGGTAATGTTTCCAAAGGTGTAACTGTCAATTCCAACTGGGTTATTCACGAATATCATGCTCTTAACTTTCTCCAAAGCCAGAATGCTTTTGTGTTATGCCGCTTGAAAAAGAAACATGGGAAAACGACCGAAGGAGGAACTGCTGCACTGATCTCTGATGAAGAGGAATCCAGTAGAAGTGTGGTTTCTGACAATGAACATCAGGATATAGCAGAAGGAGTTCCATCTGTAAGCTGA 585 0.412 MEIVGMGFRPTDEELVDFYLKHKLLDDDPLVHVLTDIDLSDVEPWEIPEMLAKSVIAFKTSEWFFFSPVNLKYSNSKRFKRTTKSGFWKPTGKPRDVRKGDTKTDIGTKKTLVFQSGNVSKGVTVNSNWVIHEYHALNFLQSQNAFVLCRLKKKHGKTTEGGTAALISDEEESSRSVVSDNEHQDIAEGVPSVS 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1719g00002 194 ProSiteProfiles NAC domain profile. 2 154 IPR003441 GO:0003677|GO:0006355
Vium1719g00002 194 MobiDBLite consensus disorder prediction 159 194 - -
Vium1719g00002 194 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 169 - -
Vium1719g00002 194 Gene3D NAC domain 11 159 IPR036093 GO:0003677|GO:0006355
Vium1719g00002 194 SUPERFAMILY NAC domain 4 154 IPR036093 GO:0003677|GO:0006355
Vium1719g00002 194 Pfam No apical meristem (NAM) protein 4 135 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1719g00002 Vium-Chr1719 6831 8121 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1719g00002 4 188 NAC Transcription Factor Family AT3G49530 39.706 7.95e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium1719g00002 NAM 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1719g00002 - - vum:124827643 371.703