Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1719g00001 ATGGAGATTGTAGGAATGGGTTTTCGTCCCACAGATGAAGAACTTGTCGACTTTTACCTCAAACACAAGTTGCTCGATGATGATCCCCTTGTCCATGTCTTGACTGACATAGATCTTTCCGACGTGGAACCTTGGGAAATACCAGAGATGTTAGCAAAATCAGTAATAGCATTCAAAACCTCAGAATGGTTTTTCTTCAGTCCTGTTAATTTGAAGTACTCAAATAGTAAAAGGTTTAAAAGGACAACCAAGAGTGGGTTCTGGAAACCAACGGGAAAACCCCGTGATGTTAGAAAAGGGGACACCAAAACTGACATTGGGACAAAGAAGACTCTTGTTTTCCAAAGTGGTAATGTTTCCAAAGGTGTAACTGTCAATTCCAACTGGGTTATTCACGAATATCATGCTCTTAACTTTCTCCAAAGCCAGAATGCTTTTGTGTTATGCCGCTTGAAAAAGAAACATGGGAAAACGACCGAAGGAGGAACTGCTGCACTGATCTCTGATGAAGAGGAATCCAGTAGAAGTGTGGTTTCTGACAATGAACATCAGGATATAGCAGAAGGAGTTCCATCTGGAGGTACTTTTACCGGAATGGAAACAATCTGTCAGGCAAAACATCAGGCGGAAAAATGCATCTCCCCAATCGAACAGTCACTAATTGAATTTGAGAAAGATGACGATGCCTATTTTAGAAATGAAAATAACATTAGGCAGATTCCTTGTGAAACTATGCAGATTCCCTGTGAAACTATGCAAACTATTGTGATACCACACAAATTTCTTTTGAAAGTTTGCAGATTCCCCATGAATTTATGCAGACTCCTTATGAAACTATGCAAGTTTCTTGTGAAACTATGCATATTCTTTGTGAAACTATGCAAATTCCATGTGAAAGTATAG 903 0.3931 MEIVGMGFRPTDEELVDFYLKHKLLDDDPLVHVLTDIDLSDVEPWEIPEMLAKSVIAFKTSEWFFFSPVNLKYSNSKRFKRTTKSGFWKPTGKPRDVRKGDTKTDIGTKKTLVFQSGNVSKGVTVNSNWVIHEYHALNFLQSQNAFVLCRLKKKHGKTTEGGTAALISDEEESSRSVVSDNEHQDIAEGVPSGGTFTGMETICQAKHQAEKCISPIEQSLIEFEKDDDAYFRNENNIRQIPCETMQIPCETMQTIVIPHKFLLKVCRFPMNLCRLLMKLCKFLVKLCIFFVKLCKFHVKV 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1719g00001 300 ProSiteProfiles NAC domain profile. 2 154 IPR003441 GO:0003677|GO:0006355
Vium1719g00001 300 SUPERFAMILY NAC domain 4 154 IPR036093 GO:0003677|GO:0006355
Vium1719g00001 300 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 204 - -
Vium1719g00001 300 Gene3D NAC domain 11 159 IPR036093 GO:0003677|GO:0006355
Vium1719g00001 300 Pfam No apical meristem (NAM) protein 4 135 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1719g00001 Vium-Chr1719 5868 8124 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1719g00001 4 188 NAC Transcription Factor Family AT3G49530 39.706 3.19e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium1719g00001 NAM 4.4e-28 No_clan