Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1718g00003 ATGGGTGAGTCTATATATATTAGTTCGTCAGATGACGATGAGTTGGAGGAGATAGATGTTCAAAAGAGAACTCTTCCGCAATGGGCAACAACTTTTGAAAGGAGTTCAGACTATGGTAGGCGGAATAATTCTTCAAGAGGGTCAAATAGTTCAAACCTAAGTTCTTCTAGTGTTTATAATCATTCACAAATCAAACCTCATACACTACCTGGGTCCAGTACCAATGCACTGAACAACAGAATTGCACGAAGAGATGAACCTTCCTACCGTGCTCAGAATGGAAACACAAGTCAGCAACAAACAGTTAATTCCCGAATTTCAAACTCTGATGGTGTAGATCATGAGAAAATGTCATCTCAGCAAGCTTTCAAGAGGACCCTTCCTTCAACTCTTCAGCCTTCTGTAACAAGGGCTCTTCCTTCTCCTTTATTTGTGTCAGACATCAGATCAAGCAACTTAAAAGATAACCCAGGCAGTAGTCATCTTCATGATGCATATAAGAATCATCGCCAGGGAGTAGGGCCTAGCATGTCCGGTGACAGGGGCTACATTCGTGACAGTTTTATCAGGGGCCATGACGAAGGTCATTTATTGTATCAAAATAGTGGGAACAGGATTCTTCCACCATCTTTGGTGCTTGGAAAGGCCATAACTCCACACTTTGCACTTTCTAGTGAATCTGCATATCATTCTGGAATAGGTGATGAAAGGTCTGCTGAAAATGACGAGAGACTTATTTATGAGGCAGCATTACAGGATATCAGTCAACCTAAAACAGAATATGACTTACCTGCTGGTGTATTGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAAAGAGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGACCAGGGTCTTGGAAAGACAGTATCAAAGATTTCCCTCATTCTGGCATTGAGGTCATTACAAACAAAATCGAAAACAGATGATGTGCACAATCATAAAACTGAAGCTTTGAATTTGGATGACGATGATGACAATGGTGTTATAGATGTGGAAAAACATAAAAATAGTGTGGAAGCTGTTGATTTGTTTCCTAATAGAGAACCTAGCTGTTCAACACAGGCACCTGTTAGAAAAAGGCCGGCTGCTGGTACCCTAGTTGTCTGCCCTGCCAGTGTTATGCGACAGTGGGCCAGGGAACTTGATGAAAAAGTTGGAGATGAAAAACTTTCTGTTTTAATTTATCATGGGGGAAATAGGACTAAGGATCATGTAGAACTTGCAAAATTTGATGTGGTTCTAACAACATACTCTATTGTGACTAATGAAGTGCCTAAGCAACCATTAGTTGAGGATGATGATATTGAGGACAAAAGTGGGGAAAGGTTTGGGTTATCCTCTGAGTTTACTGTTAAAAAAAGGAAAAAAACAATTAACGGAAGTAAGAAGGGTAAAAAAGGTAGAAAAGGAATTGACAGTTCGAGGGAATATGGTTCTGGCCCTCTTGCAAAAGTAGGGTGGTTTCGGGTTATTCTAGACGAGGCTCAAACAATAAAAAATCATAGAACTCAGGTGGCTAGAGCTTGTTGCAGCCTAAGAGCCAAAAGAAGGTGGTGCTTATCTGGAACGCCTATTCAAAATACTATTGATGATTTGTATAGCTACTTTAGATTCTTGAAGTATGATCCTTATGCTGCATATAAATCATTCTACAACACCATAAAGGTTCCCATAGCCCGAGATACCATTCAAGGTTACAAGAAACTTCAAGCAGTTTTAAAGGCCATAATGCTACGTCGTACAAAAGGAACTTTGCTTGATGGGAAGCCAATAATCAATTTGCCTCCTAAAACAATTGAGCTCAGTAGTGTGGATTTCTCCGTTGAGGAACGAGCCTTCTATACTAAGTTGGAATCAGACTCACGCACTCAATTTAAGGCATATGCTGCTGCTGGGACAGTGAACCAAAACTATGCTAATATTCTTTTAATGCTCTTACGTCTTCGACAGGCTTGTGATCACCCACGTCTTGTTAAAGATTTTGATTCTGATCCTGTTGGGAAGGATTCTGTTGAAATGGCAAAAACTCTTCCAAGGGAATTGCTGATTAATCTGTTTAAGTGTTTGCACGCAACCTTTACTATCTGTCATGTTTGCAATGATCCCCCTCATGGCCCTGTTATTACAATGTGCGGCCATGTCTTCTGTTATGAATGTGTACAGGAATATTTGTCTGGTGATGATAATACGTGCCCTGCTGTAAATTGTAAAGAAACAATCGGTGATGATCTTGTTTACTCCAAAGTTACTTTGAAGAGTTGTATCTCTGATGATGGTGGCACTTCTAGTTCTTCAAATTCACATCTCAGTGATTATTCGCTAGTGCAGCGGGATGATTACATTTCATCTAAAATCAAAGCTGTTCTTGAGGTTTTGCAGTCAAATTGTCACATGAAAATATCTAATTCTGACTTACGGAACTCTGGATGTTGTAGAGATTCGCCGTCATCTTCTATTGATCTAGAGTTTGATGACAGTGATTCAGAGGCTAGGGTTGCAAAACACACAAGAAAGTATTCAGAGTCCTCAACTGAAGGACCGATAAAGGCTATAGTTTTTTCCCAGTGGACTAGCATGTTGGATTTAGTTGAGACATCATTGTGTCAATTTGGTATACTGTACAGGAGACTTGATGGTAGGATGACTCTGGGTGCAAGGGACAAAGCTGTTAGGGATTTCAATACTGAACCTGAGATAACTGTTATGCTGATGTCACTAAAGGCAGGAAACCTTGGATTGAATATGGTTGCTGCTTGTCATGTTATTCTTTTGGATCTGTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCCCATAGAATTGGACAAACTCGTCCTGTTACCGTGACAAGGATTACTATAAAAGATACCGTTGAAGATCGGATACTGTCTCTACAGGAGGATAAGAGAGAAATGGTTGCATCTGCTTTTGGGGAAGACCATGCTGGTAGGTCTGGAACTCGCCTTACAGTGGATGATCTGAAATATCTCTTCATGGTCTAG 3066 0.4051 MGESIYISSSDDDELEEIDVQKRTLPQWATTFERSSDYGRRNNSSRGSNSSNLSSSSVYNHSQIKPHTLPGSSTNALNNRIARRDEPSYRAQNGNTSQQQTVNSRISNSDGVDHEKMSSQQAFKRTLPSTLQPSVTRALPSPLFVSDIRSSNLKDNPGSSHLHDAYKNHRQGVGPSMSGDRGYIRDSFIRGHDEGHLLYQNSGNRILPPSLVLGKAITPHFALSSESAYHSGIGDERSAENDERLIYEAALQDISQPKTEYDLPAGVLSVSLLRHQKIALAWMLQRETKSLHCLGGILADDQGLGKTVSKISLILALRSLQTKSKTDDVHNHKTEALNLDDDDDNGVIDVEKHKNSVEAVDLFPNREPSCSTQAPVRKRPAAGTLVVCPASVMRQWARELDEKVGDEKLSVLIYHGGNRTKDHVELAKFDVVLTTYSIVTNEVPKQPLVEDDDIEDKSGERFGLSSEFTVKKRKKTINGSKKGKKGRKGIDSSREYGSGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAAYKSFYNTIKVPIARDTIQGYKKLQAVLKAIMLRRTKGTLLDGKPIINLPPKTIELSSVDFSVEERAFYTKLESDSRTQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDFDSDPVGKDSVEMAKTLPRELLINLFKCLHATFTICHVCNDPPHGPVITMCGHVFCYECVQEYLSGDDNTCPAVNCKETIGDDLVYSKVTLKSCISDDGGTSSSSNSHLSDYSLVQRDDYISSKIKAVLEVLQSNCHMKISNSDLRNSGCCRDSPSSSIDLEFDDSDSEARVAKHTRKYSESSTEGPIKAIVFSQWTSMLDLVETSLCQFGILYRRLDGRMTLGARDKAVRDFNTEPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILSLQEDKREMVASAFGEDHAGRSGTRLTVDDLKYLFMV 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1718g00003 1021 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 257 599 IPR027417 -
Vium1718g00003 1021 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 480 611 - -
Vium1718g00003 1021 MobiDBLite consensus disorder prediction 89 108 - -
Vium1718g00003 1021 SMART helicmild6 880 963 IPR001650 -
Vium1718g00003 1021 MobiDBLite consensus disorder prediction 475 494 - -
Vium1718g00003 1021 CDD SF2_C_SNF 864 972 - -
Vium1718g00003 1021 SMART ultradead3 268 569 IPR014001 -
Vium1718g00003 1021 CDD DEXDc_SHPRH-like 272 599 - -
Vium1718g00003 1021 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 50 1020 - -
Vium1718g00003 1021 SMART ring_2 715 753 IPR001841 -
Vium1718g00003 1021 SUPERFAMILY RING/U-box 712 772 - -
Vium1718g00003 1021 ProSitePatterns Zinc finger RING-type signature. 730 739 IPR017907 -
Vium1718g00003 1021 Gene3D - 246 333 IPR038718 -
Vium1718g00003 1021 Gene3D - 475 612 IPR038718 -
Vium1718g00003 1021 MobiDBLite consensus disorder prediction 1 77 - -
Vium1718g00003 1021 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 608 1020 IPR027417 -
Vium1718g00003 1021 MobiDBLite consensus disorder prediction 24 77 - -
Vium1718g00003 1021 Gene3D - 368 454 IPR038718 -
Vium1718g00003 1021 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 709 765 IPR013083 -
Vium1718g00003 1021 Gene3D - 614 1020 IPR027417 -
Vium1718g00003 1021 MobiDBLite consensus disorder prediction 89 134 - -
Vium1718g00003 1021 Pfam Helicase conserved C-terminal domain 865 963 IPR001650 -
Vium1718g00003 1021 ProSiteProfiles Zinc finger RING-type profile. 715 754 IPR001841 -
Vium1718g00003 1021 Pfam SNF2-related domain 275 677 IPR000330 GO:0005524|GO:0140658
Vium1718g00003 1021 MobiDBLite consensus disorder prediction 157 179 - -
Vium1718g00003 1021 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 850 1016 IPR001650 -
Vium1718g00003 1021 Pfam Zinc finger, C3HC4 type (RING finger) 715 751 IPR018957 GO:0046872
Vium1718g00003 1021 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 365 452 - -
Vium1718g00003 1021 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 287 561 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1718g00003 Vium-Chr1718 2559 14411 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1718g00003 1 921 RAD5 or RAD16-like Gene Family AT1G50410 53.474 0.0 910
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium1718g00003 SNF2_N 2e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1718g00003 - - gmx:100795142 1606.65