Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1718g00001 ATGACTCTGGGTGCAAGGGACAAAGCTGTTAGGGATTTCAATACTGAACCTGAGATAACTGTTATGCTGATGTCACTAAAGGCAGGAAACCTTGGTTTGAATATGGTTGCTGCTTGTCATGTTATTCTTTTGGATCCGTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCCCATAGAATTGGACAAACTCGTCCAGTTACAGTGACAAGGATTACTATAAAAAATACAGTTGAAGATCGGATACTGTCTCTACAGGTACAATATCCGCCAGTTTAA 285 0.407 MTLGARDKAVRDFNTEPEITVMLMSLKAGNLGLNMVAACHVILLDPWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVEDRILSLQVQYPPV 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1718g00001 94 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 90 IPR027417 -
Vium1718g00001 94 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 1 88 - -
Vium1718g00001 94 Gene3D - 1 91 IPR027417 -
Vium1718g00001 94 Pfam Helicase conserved C-terminal domain 4 64 IPR001650 -
Vium1718g00001 94 CDD SF2_C_SNF 1 73 - -
Vium1718g00001 94 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 94 IPR001650 -
Vium1718g00001 94 SMART helicmild6 1 64 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1718g00001 Vium-Chr1718 7 780 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1718g00001 1 88 RAD5 or RAD16-like Gene Family AT1G61140 80.682 1.17e-47 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1718g00001 - - vum:124827638 192.586