Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium1718g00001 | ATGACTCTGGGTGCAAGGGACAAAGCTGTTAGGGATTTCAATACTGAACCTGAGATAACTGTTATGCTGATGTCACTAAAGGCAGGAAACCTTGGTTTGAATATGGTTGCTGCTTGTCATGTTATTCTTTTGGATCCGTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCCCATAGAATTGGACAAACTCGTCCAGTTACAGTGACAAGGATTACTATAAAAAATACAGTTGAAGATCGGATACTGTCTCTACAGGTACAATATCCGCCAGTTTAA | 285 | 0.407 | MTLGARDKAVRDFNTEPEITVMLMSLKAGNLGLNMVAACHVILLDPWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVEDRILSLQVQYPPV | 94 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium1718g00001 | 94 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 90 | IPR027417 | - | |
Vium1718g00001 | 94 | PANTHER | TRANSCRIPTION TERMINATION FACTOR 2-RELATED | 1 | 88 | - | - | |
Vium1718g00001 | 94 | Gene3D | - | 1 | 91 | IPR027417 | - | |
Vium1718g00001 | 94 | Pfam | Helicase conserved C-terminal domain | 4 | 64 | IPR001650 | - | |
Vium1718g00001 | 94 | CDD | SF2_C_SNF | 1 | 73 | - | - | |
Vium1718g00001 | 94 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1 | 94 | IPR001650 | - | |
Vium1718g00001 | 94 | SMART | helicmild6 | 1 | 64 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium1718g00001 | Vium-Chr1718 | 7 | 780 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium1718g00001 | 1 | 88 | RAD5 or RAD16-like Gene Family | AT1G61140 | 80.682 | 1.17e-47 | 159 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium1718g00001 | - | - | vum:124827638 | 192.586 |