LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1718g00001	ATGACTCTGGGTGCAAGGGACAAAGCTGTTAGGGATTTCAATACTGAACCTGAGATAACTGTTATGCTGATGTCACTAAAGGCAGGAAACCTTGGTTTGAATATGGTTGCTGCTTGTCATGTTATTCTTTTGGATCCGTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCCCATAGAATTGGACAAACTCGTCCAGTTACAGTGACAAGGATTACTATAAAAAATACAGTTGAAGATCGGATACTGTCTCTACAGGTACAATATCCGCCAGTTTAA	285	0.407	MTLGARDKAVRDFNTEPEITVMLMSLKAGNLGLNMVAACHVILLDPWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVEDRILSLQVQYPPV	94

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1718g00001	94	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	1	90	IPR027417	-
	Vium1718g00001	94	PANTHER	TRANSCRIPTION TERMINATION FACTOR 2-RELATED	1	88	-	-
	Vium1718g00001	94	Gene3D	-	1	91	IPR027417	-
	Vium1718g00001	94	Pfam	Helicase conserved C-terminal domain	4	64	IPR001650	-
	Vium1718g00001	94	CDD	SF2_C_SNF	1	73	-	-
	Vium1718g00001	94	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	1	94	IPR001650	-
	Vium1718g00001	94	SMART	helicmild6	1	64	IPR001650	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1718g00001	Vium-Chr1718	7	780	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1718g00001	1	88	RAD5 or RAD16-like Gene Family	AT1G61140	80.682	1.17e-47	159

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1718g00001	-		-	vum:124827638	192.586

Showing 1 to 1 of 1 entries