LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1716g00011	ATGCCAGGAATGGCAGCGTATCAGTGGCAGTGCAGGAAAAGAGAGGGAGAGCTTTCATTGGGAAGTAACAGTGGAACTCCTTCTATCATGCTCGACAATAACCACAACAACAACGATGATAACAACACTGGGGTAGGGTACTATTTCATGGAGAGTGGCCATCCCAACCACCGCAGCAACAACAATGGAAGCTCCTCCTCCTCCTCCTCTTCTGCTGTCAAGGCTAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCTTACGTCAATTGTCAGAAGGTTGGAGCCCCGCCTGAAGTGGTGGCAAGGTTAGAGGAAGCCTGTGCTTCTACGGTGACAATGGCCGGAGATGCACCTGGATCGAGCTGCATAGGTGAGGATCCAGCTCTGGATCAGTTCATGGAAGCTTACTGCGAGATGCTGACCAAGTATGAGCAAGAACTCTCCAAACCCTTAAAAGAAGCCATGCTCTTCCTTCAAAGGGTTGAGTGTCAGCTCAAAAACCTAACAGTTTCTTCCTCCGACTTCGGTTGTAATGAGGGTGGTGATAGGAATGGATCATCTGAAGAAGATGTTGATCTACAGAGCATGATAGATCCGCAGGCAGAGGACAGGGAATTAAAGGGTCAGCTTCTGCGGAAGTACAGTGGATACTTGGGCAGTCTTAAGCAGGAGTTCATGAAAAAGAGGAAAAAGGGAAAGCTACCTAAAGAAGCAAGGCAACAATTGCTTGAATGGTGGAGCAGACATTACAAATGGCCTTATCCATCCGAGTCACAGAAGCTGGCTCTTGCAGAGTCGACAGGTCTGGATCAGAAGCAAATCAACAACTGGTTTATTAATCAAAGGAAACGACACTGGAAGCCTTCGGAGGACATGCAGTTTGTGGTGATGGATCCAAGCCATCCACACTACTACGTCGACACTGTTATGGCCAATCCATTTCCCATGGATCTCTCCCATCCCATGCTCTAG	981	0.4852	MPGMAAYQWQCRKREGELSLGSNSGTPSIMLDNNHNNNDDNNTGVGYYFMESGHPNHRSNNNGSSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASTVTMAGDAPGSSCIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRVECQLKNLTVSSSDFGCNEGGDRNGSSEEDVDLQSMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYVDTVMANPFPMDLSHPML	326

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1716g00011	326	ProSitePatterns	'Homeobox' domain signature.	266	289	IPR017970	GO:0000981\|GO:0006355
	Vium1716g00011	326	SMART	KNOX2_2	122	173	IPR005541	GO:0003677\|GO:0005634
	Vium1716g00011	326	Gene3D	-	233	295	-	-
	Vium1716g00011	326	MobiDBLite	consensus disorder prediction	18	72	-	-
	Vium1716g00011	326	Pfam	KNOX1 domain	72	111	IPR005540	GO:0003677\|GO:0005634
	Vium1716g00011	326	MobiDBLite	consensus disorder prediction	18	45	-	-
	Vium1716g00011	326	ProSiteProfiles	'Homeobox' domain profile.	228	291	IPR001356	GO:0003677
	Vium1716g00011	326	Pfam	Homeobox KN domain	248	287	IPR008422	GO:0003677\|GO:0006355
	Vium1716g00011	326	FunFam	Homeobox protein knotted-1-like 2	233	295	-	-
	Vium1716g00011	326	CDD	homeodomain	240	292	IPR001356	GO:0003677
	Vium1716g00011	326	SMART	HOX_1	230	295	IPR001356	GO:0003677
	Vium1716g00011	326	Pfam	ELK domain	208	229	IPR005539	GO:0003677
	Vium1716g00011	326	MobiDBLite	consensus disorder prediction	54	72	-	-
	Vium1716g00011	326	SMART	KNOX1_2	71	115	IPR005540	GO:0003677\|GO:0005634
	Vium1716g00011	326	ProSiteProfiles	ELK domain profile.	208	228	IPR005539	GO:0003677
	Vium1716g00011	326	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	56	297	-	-
	Vium1716g00011	326	SUPERFAMILY	Homeodomain-like	230	306	IPR009057	-
	Vium1716g00011	326	Pfam	KNOX2 domain	125	172	IPR005541	GO:0003677\|GO:0005634
	Vium1716g00011	326	SMART	ELK_2	208	229	IPR005539	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1716g00011	Vium-Chr1716	81498	87740	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1716g00011	73	326	Homeobox Transcription Factor Family	AT1G62360	79.008	7.36e-132	379

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Vium1716g00011		KNOX2	9.3e-22	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1716g00011	-		-	gmx:100805837	536.569