LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1716g00008	ATGGCAGCGTATCAGTGGCAGTGCAGGAAAAGAGAGGGAGAGCTTTCATTGGGAAGTAACAGTGGAACTCCTTCTATCATGCTCGACAATAACCACAACAACAACGATGATAACAACACTGGGGTAGGGTACTATTTCATGGAGAGTGGCCATCCCAACCACCGCAGCAACAACAATGGAAGCTCCTCCTCCTCCTCCTCTTCTGCTGTCAAGGCTAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCTTACGTCAATTGTCAGAAGGTTGGAGCCCCGCCTGAAGTGGTGGCAAGGTTAGAGGAAGCCTGTGCTTCTACGGTGACAATGGCCGGAGATGCACCTGGATCGAGCTGCATAGGTGAGGATCCAGCTCTGGATCAGTTCATGGAAGCTTACTGCGAGATGCTGACCAAGTATGAGCAAGAACTCTCCAAACCCTTAAAAGAAGCCATGCTCTTCCTTCAAAGGGTTGAGTGTCAGCTCAAAAACCTAACAGTTTCTTCCTCCGACTTCGGTTGTAATGAGGGTGGTGATAGGAATGGATCATCTGAAGAAGATGTTGATCTACAGAGCATGATAGATCCGCAGGCAGAGGACAGGGAATTAAAGGGTCAGCTTCTGCGGAAGTACAGTGGATACTTGGGCAGTCTTAAGCAGGAGTTCATGAAAAAGAGGAAAAAGGGAAAGCTACCTAAAGAAGCAAGGCAACAATTGCTTGAATGGTGGAGCAGACATTACAAATGGCCTTATCCATCCGAGTCACAGAAGCTGGCTCTTGCAGAGTCGACAGGTCTGGATCAGAAGCAAATCAACAACTGGTTTATTAATCAAAGGAAACGACACTGGAAGCCTTCGGAGGACATGCAGTTTGTGGTGATGGATCCAAGCCATCCACACTACTACGTCGACACTGTTATGGCCAATCCATTTCCCATGGATCTCTCCCATCCCATGCTCTAG	972	0.4846	MAAYQWQCRKREGELSLGSNSGTPSIMLDNNHNNNDDNNTGVGYYFMESGHPNHRSNNNGSSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASTVTMAGDAPGSSCIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRVECQLKNLTVSSSDFGCNEGGDRNGSSEEDVDLQSMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYVDTVMANPFPMDLSHPML	323

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1716g00008	323	Pfam	ELK domain	205	226	IPR005539	GO:0003677
	Vium1716g00008	323	MobiDBLite	consensus disorder prediction	14	70	-	-
	Vium1716g00008	323	Pfam	KNOX2 domain	122	169	IPR005541	GO:0003677\|GO:0005634
	Vium1716g00008	323	SUPERFAMILY	Homeodomain-like	227	303	IPR009057	-
	Vium1716g00008	323	Pfam	Homeobox KN domain	245	284	IPR008422	GO:0003677\|GO:0006355
	Vium1716g00008	323	ProSiteProfiles	'Homeobox' domain profile.	225	288	IPR001356	GO:0003677
	Vium1716g00008	323	Gene3D	-	230	292	-	-
	Vium1716g00008	323	ProSiteProfiles	ELK domain profile.	205	225	IPR005539	GO:0003677
	Vium1716g00008	323	MobiDBLite	consensus disorder prediction	14	42	-	-
	Vium1716g00008	323	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	54	294	-	-
	Vium1716g00008	323	SMART	ELK_2	205	226	IPR005539	GO:0003677
	Vium1716g00008	323	CDD	homeodomain	237	289	IPR001356	GO:0003677
	Vium1716g00008	323	MobiDBLite	consensus disorder prediction	51	70	-	-
	Vium1716g00008	323	SMART	HOX_1	227	292	IPR001356	GO:0003677
	Vium1716g00008	323	FunFam	Homeobox protein knotted-1-like 2	230	292	-	-
	Vium1716g00008	323	ProSitePatterns	'Homeobox' domain signature.	263	286	IPR017970	GO:0000981\|GO:0006355
	Vium1716g00008	323	SMART	KNOX1_2	68	112	IPR005540	GO:0003677\|GO:0005634
	Vium1716g00008	323	SMART	KNOX2_2	119	170	IPR005541	GO:0003677\|GO:0005634
	Vium1716g00008	323	Pfam	KNOX1 domain	69	108	IPR005540	GO:0003677\|GO:0005634

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1716g00008	Vium-Chr1716	81479	87740	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1716g00008	70	323	Homeobox Transcription Factor Family	AT1G62360	79.008	4.95e-132	379

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Vium1716g00008		KNOX2	9.2e-22	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1716g00008	-		-	gmx:100805837	536.569