Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1716g00004 ATGTTATTACGAGCTTGGAACAGCCCAGTTGCTTGGCAACTTACCCTTTCTCATCCATCAGAACAAAAACATATTCCAGGGGATGACATGTCATCGAAAGATATAAATACAGAAGATACAGATCTATGTATACTCATATTTCATTCTCTCGTTGGCTCAGATAAGGCTGAAATTGAATTCATTAAGCAAGGGGAATTAAGTCCTGAAGAGGTTGATGCTTTCATCTCTGTTTTACAATTAGCTGGTAACAAGTTGGGACAGAAAAGCACCCTGGAAAGAAAACCAAAGGAAGAGACTGAAAAGGTGCCATCTGTAGATAAATCTATTTCTGATCTTGAGGGTATGGGAGTGAGAATTTATGGACTTGATGAACCCGTAGGTATATCGAAAGATGCAGAGATATCATGGGACAACATTGCTGGTTATGAACATCAAAAACGATTAATAGAAGATACAATACTATTGGCACTGCATAGTCCTGAAGTATATGATGATATTGCCCGAGGGACTCGTCATAAGTTTGAGTCAAACAGACCTAGAGCTGTGCTATTTGAAGGTCCACCTGGTACAGGGAAAACGTCCTGTGCTCGTGTTATTGCCAATCAAGCGGGTGTTCCTTTACTATATGTTCCACTTGAGGCAATAATGTCTGAGTTCTATGGTAAAAGTGAACGTCTTCTAGGGAAAGTGTTTTCGCTTGCAAACAATCTTCCAAATGGTGCTATTATATTTCTGGATGAGATTGATTCTTTTGCTGCTGCACGTGACAATGAAATGCATGAAGCTACACGCAGAATATTGTCAGTCTTGTTGAGACAGATAGATGGCTTTGAGCAGGATAAGAAAGTAGTAGTCATTGCTGCCACAAATAGAAAGGAAGACCTTGATCCCGCATTAATCAGTCGGTTTGATAGTATGATCGCTTTTGGCTTACCTGATCATCGGAATCGTCAGGAAATAGCATCCAAATATGCAAAGCACCTGTCCAAACCCGAACTAGAAGAATTTGCAAGAGTTACTGAAGATCTGTCTGGAAGAGATATTAGAGATGTTTGTCAGCAAGCAGAACGATCGTGGGCGTCAAAGATTATTCGAGGACAAGTGCCTAAAGAGGGGGAAAAAGCGAAGCTTCCAGCTTTGCAAGAATACATAGAATGCGCCGAGAGTCGACAGGAGGCGCTGCGTAGTGCTGCAGCAAACAGAAAGCTCCCAACCTCTTCCCACCCCAAGATACTATACTAA 1242 0.4155 MLLRAWNSPVAWQLTLSHPSEQKHIPGDDMSSKDINTEDTDLCILIFHSLVGSDKAEIEFIKQGELSPEEVDAFISVLQLAGNKLGQKSTLERKPKEETEKVPSVDKSISDLEGMGVRIYGLDEPVGISKDAEISWDNIAGYEHQKRLIEDTILLALHSPEVYDDIARGTRHKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLLYVPLEAIMSEFYGKSERLLGKVFSLANNLPNGAIIFLDEIDSFAAARDNEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKEDLDPALISRFDSMIAFGLPDHRNRQEIASKYAKHLSKPELEEFARVTEDLSGRDIRDVCQQAERSWASKIIRGQVPKEGEKAKLPALQEYIECAESRQEALRSAAANRKLPTSSHPKILY 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1716g00004 413 CDD RecA-like_protease 167 309 - -
Vium1716g00004 413 ProSitePatterns AAA-protein family signature. 283 302 IPR003960 GO:0005524|GO:0016887
Vium1716g00004 413 Gene3D - 132 311 IPR027417 -
Vium1716g00004 413 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 107 357 - -
Vium1716g00004 413 SMART AAA_5 178 313 IPR003593 GO:0016887
Vium1716g00004 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 360 IPR027417 -
Vium1716g00004 413 Gene3D - 312 384 - -
Vium1716g00004 413 Pfam ATPase family associated with various cellular activities (AAA) 182 310 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1716g00004 Vium-Chr1716 41383 47355 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1716g00004 178 378 Calmodulin-binding Proteins AT3G56690 36.058 5.75e-29 117