Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1716g00003 ATGGAGCGTTTGGCTAGGTCAGCTCGAGCGTGGCGTTGGTATTGGCGTTCGTTTTCCTCTTTTCAAACCCTAACTTCTCGATCCTCACGTCTATCTACACATCCCAAATTTGCGTCTTCTTGGTTTTCCTCTTCCGATGTTTCGATGTCCAGAGTCTTGCCCGAGGATTATTCATGGCTTCCGGTCTTCTTTGCTGGTGTTTTTGGATCTGGATTGGTGGGAGTGGCTTATGCGGATAATGCTACTGTGGATGTCCAAGAAAGAGCCAAGAAGGAACGCGAGCGAATTGAGGAGTTGATTAGAAGTAGAGGAATTCGATACGGTTCTTATCCTTCATTCTCTGTTGCCGTTAAAGGCCAAAAGGTCAGTGTTAAGTTTCAAATTCCTCATGGTTGTGATATTTCACAACTTATTGCAAATCTTACTGCTCGTCTTGGAACGAAGGCTGAAGCCCATGGAGGTGGTTCAGACATGTTATTACGAGCTTGGAACAGCCCAGTTGCTTGGCAACTTACCCTTTCTCATCCATCAGAACAAAAACATATTCCAGGGGATGACATGTCATCGAAAGATATAAATACAGAAGATACAGATCTATGTATACTCATATTTCATTCTCTCGTTGGCTCAGATAAGGCTGAAATTGAATTCATTAAGCAAGGGGAATTAAGTCCTGAAGAGGTTGATGCTTTCATCTCTGTTTTACAATTAGCTGGTAACAAGTTGGGACAGAAAAGCACCCTGGAAAGAAAACCAAAGGAAGAGACTGAAAAGGTGCCATCTGTAGATAAATCTATTTCTGATCTTGAGGGTATGGGAGTGAGAATTTATGGACTTGATGAACCCGTAGGTATATCGAAAGATGCAGAGATATCATGGGACAACATTGCTGGTTATGAACATCAAAAACGATTAATAGAAGATACAATACTATTGGCACTGCATAGTCCTGAAGTATATGATGATATTGCCCGAGGGACTCGTCATAAGTTTGAGTCAAACAGACCTAGAGCTGTGCTATTTGAAGGTCCACCTGGTACAGGGAAAACGTCCTGTGCTCGTGTTATTGCCAATCAAGCGGGTGTTCCTTTACTATATGTTCCACTTGAGGCAATAATGTCTGAGTTCTATGGTAAAAGTGAACGTCTTCTAGGGAAAGTGTTTTCGCTTGCAAACAATCTTCCAAATGGTGCTATTATATTTCTGGATGAGATTGATTCTTTTGCTGCTGCACGTGACAATGAAATGCATGAAGCTACACGCAGAATATTGTCAGTCTTGTTGAGACAGATAGATGGCTTTGAGCAGGATAAGAAAGTAGTAGTCATTGCTGCCACAAATAGAAAGGAAGACCTTGATCCCGCATTAATCAGTCGGTTTGATAGTATGATCGCTTTTGGCTTACCTGATCATCGGAATCGTCAGGAAATAGCATCCAAATATGCAAAGCACCTGTCCAAACCCGAACTAGAAGAATTTGCAAGAGTTACTGAAGATCTGTCTGGAAGAGATATTAGAGATGTTTGTCAGCAAGCAGAACGATCGTGGGCGTCAAAGATTATTCGAGGACAAGTGCCTAAAGAGGGGGAAAAAGCGAAGCTTCCAGCTTTGCAAGAATACATAGAATGCGCCGAGAGTCGACAGGAGGCGCTGCGTAGTGCTGCAGCAAACAGAAAGCTCCCAACCTCTTCCCACCCCAAGATACTATACTAA 1713 0.4273 MERLARSARAWRWYWRSFSSFQTLTSRSSRLSTHPKFASSWFSSSDVSMSRVLPEDYSWLPVFFAGVFGSGLVGVAYADNATVDVQERAKKERERIEELIRSRGIRYGSYPSFSVAVKGQKVSVKFQIPHGCDISQLIANLTARLGTKAEAHGGGSDMLLRAWNSPVAWQLTLSHPSEQKHIPGDDMSSKDINTEDTDLCILIFHSLVGSDKAEIEFIKQGELSPEEVDAFISVLQLAGNKLGQKSTLERKPKEETEKVPSVDKSISDLEGMGVRIYGLDEPVGISKDAEISWDNIAGYEHQKRLIEDTILLALHSPEVYDDIARGTRHKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLLYVPLEAIMSEFYGKSERLLGKVFSLANNLPNGAIIFLDEIDSFAAARDNEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKEDLDPALISRFDSMIAFGLPDHRNRQEIASKYAKHLSKPELEEFARVTEDLSGRDIRDVCQQAERSWASKIIRGQVPKEGEKAKLPALQEYIECAESRQEALRSAAANRKLPTSSHPKILY 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1716g00003 570 ProSitePatterns AAA-protein family signature. 440 459 IPR003960 GO:0005524|GO:0016887
Vium1716g00003 570 CDD RecA-like_protease 324 466 - -
Vium1716g00003 570 Gene3D - 469 541 - -
Vium1716g00003 570 Pfam ATPase family associated with various cellular activities (AAA) 339 467 IPR003959 GO:0005524|GO:0016887
Vium1716g00003 570 Gene3D - 289 468 IPR027417 -
Vium1716g00003 570 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 263 514 - -
Vium1716g00003 570 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 288 516 IPR027417 -
Vium1716g00003 570 SMART AAA_5 335 470 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1716g00003 Vium-Chr1716 40908 47355 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1716g00003 335 512 Calmodulin-binding Proteins AT3G56690 38.378 3.39e-28 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1716g00003 - - var:108341616 979.163