Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1712g00003 ATGAAGAACCTAATGTCTTTAATGAGAATCATTTTTCTGTGTTATCATATGCTTCTCTGTCTTTGTGAAATTTCCTTGGCACTTGACTCCATTTCTCAAGACCTGTCTCTAAGTGATGATGTTGATAACACCACCTTGGTTTCGAAAGATGGAACCTTCGAACTTGGATTCTTCACCCCAGGAAATTCCCAGAAACGTTACCTGGGGGTTTGGTACAGGAAAATCCCTATTCAAACTGTGGTTTGGGTTGCAAACAGGCTCAATCCGATCAATGATTCATCTGGCATCTTGAGGATGAACACCAGCAGTGGGAACCTTGTCCTCACACAGGATGACAAAGTTGTTTGGACTACAACCTCTTTGAAAAAAGCAGAAAGCCCAGTAGCCCTTCTCTTGGATTCTGGCAATCTTGTGATAAGAGATGAGAAAGATGCAAACATTGAGGCCTACTTGTGGCAGAGCTTTGACTACCCTACTGATACCTTCTTACCAGAAATGAAGTTTGGTTGGGACTTGAGAACTGGTCTCAATAGGAAGATAACAGCTTGGAAGAGTCCTGATGATCCATCTCCCAGTGACTTCTCTTTTGGTATGGTGCTCAACAGCTATCCCGAAGCATACATGATGAAGGGTAACGAAAAGTTCTACCGAAGTGGACCATGGAATGGCTTGCATTCAAGTGGTTCACCACATGTTAGGGCCAACCCCATTTATGACTTCAGGTTTGTTTTCAACGAAGCTGAAGTTTACTACACATATAGCCTCAAGAACTCCTCTGTGATCTCGAGGTTGGTGCTGAATGCAACAAGCTATGTTCGCAGACGGTATGTCTGGATTGAATCAAAGCAAATATGGGAGGTCTACACTTCAGTGCCACTGGACTTATGTGACAGTTATTCCCTTTGTGGAGCTAATGCAAATTGTGTTATATCAGATTCACCTGTGTGCCAATGTTTGGAAGGGTTCAAACCTAAGTACCCTCAAGCATGGAACTCAATGGATTGGTCTCATGGATGTGTCCGCAATAAGGAATTAAGCTGTGAGAACAAACACAAGGATGAATTTATCAAACTGCCTGAGATGAAAACGCCTGACACTACACATAGTTGGCTAGATCAGACAATTGGGCTAGAGGAATGCAGAGCTAAGTGCTTGGATAACTGTTCCTGTATGGCTTATGCAAATTCAGATATCAGTGGACAAGGAAGTGGTTGTGCCATGTGGTTTGGTGATCTCCTTGATATGAGACAGTTTTCAGATGGAGGCCAGGAAGTATATGTTCGAGTGGATGCTTCAGAATTAGAACACACCAGTAAGAGCCACAAGAAGGGAAGAGTCTTGGCTGCAGTGACAGTTTCTTTAGCCGTGGCAACAGTTTCTGGTATTCTAGTAATACTTGGCTTGTGTTATAGAAAGAAATCGCGCGCCAATGTGAAAGAGAGATCAGACTTCAGTATCAAATCATATCAAAACAGTGCAATGGAAGTGGGTGATATGGACCTACCAGTTTTTGACTTGTCAACTATAGCCAAAGCCACTAACAACTTTACACTCAAGAACAAAATTGGAGAAGGTGGATTTGGATCTGTATACAGGGGAACACTAGCAGATGGACTGGAAATTGCTGTGAAGAGACTTTCACAAAGTTCAGGACAAGGATTGACTGAATTTAAGAACGAAGTAAAATTGATTGCAAAACTCCAACACCGCAATCTTGTAAAGCTTCTTGGATGTTGCCTTGAAGAAGAGGAAAAAATGTTGGTTTATGAGTACATGATAAATGGCAGCCTGAACTCATTTATTTTTGATCAGGAAAAGAGTGAGTTACTAGACTGGTCAAAGCGCTTCAACATTATATGTGGAATTACCAAGGGCCTTCTCTACCTTCATCAGGATTCCAGGCTAAGGATTATTCATAGAGATCTCAAAGCAAGTAATGTTTTACTTGATAATGAGTTGAACCCCAAAATTTCAGATTTTGGCATGGCTAGAATATTTGGTGGAGATCAGAAAGAAGGAAACACTGGGAGAATAGTTGGTACTTATGGCTACATGGCACCAGAATATGCAACTGATGGGCTATTTTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTTTATTGATGGAGATTATATCTGGGAAGAGAAGCAGAGGGTATTACAATCAGAACCACACCCAAAATCTCATAGGCCATGCATGGGAACTCTGGAAAAAAGGAAGACCACTAGAACTGGTTGATAAAAGCATAGAAAAGTCCATTTTTCAATCACAGATATTGCGTTGCATTCATGTTAGTCTCTTGTGTGTTCAACAGAATCCAGATGATAGGCCTGGAATGTCTAGTGTGCTCTTGATGTTAGTGAGTGAGGTTGAATTGCCTGAGCCAAAGCAACCAGGATTCTTTGGTAAATATTCAGGTGAAGGAGACTCCTCTACAAGCAAGCAGCAACAAAGTTCAACAAACGAAATAACCATTACCTTATTAGAAGCCCGTTGA 2499 0.4146 MKNLMSLMRIIFLCYHMLLCLCEISLALDSISQDLSLSDDVDNTTLVSKDGTFELGFFTPGNSQKRYLGVWYRKIPIQTVVWVANRLNPINDSSGILRMNTSSGNLVLTQDDKVVWTTTSLKKAESPVALLLDSGNLVIRDEKDANIEAYLWQSFDYPTDTFLPEMKFGWDLRTGLNRKITAWKSPDDPSPSDFSFGMVLNSYPEAYMMKGNEKFYRSGPWNGLHSSGSPHVRANPIYDFRFVFNEAEVYYTYSLKNSSVISRLVLNATSYVRRRYVWIESKQIWEVYTSVPLDLCDSYSLCGANANCVISDSPVCQCLEGFKPKYPQAWNSMDWSHGCVRNKELSCENKHKDEFIKLPEMKTPDTTHSWLDQTIGLEECRAKCLDNCSCMAYANSDISGQGSGCAMWFGDLLDMRQFSDGGQEVYVRVDASELEHTSKSHKKGRVLAAVTVSLAVATVSGILVILGLCYRKKSRANVKERSDFSIKSYQNSAMEVGDMDLPVFDLSTIAKATNNFTLKNKIGEGGFGSVYRGTLADGLEIAVKRLSQSSGQGLTEFKNEVKLIAKLQHRNLVKLLGCCLEEEEKMLVYEYMINGSLNSFIFDQEKSELLDWSKRFNIICGITKGLLYLHQDSRLRIIHRDLKASNVLLDNELNPKISDFGMARIFGGDQKEGNTGRIVGTYGYMAPEYATDGLFSVKSDVFSFGVLLMEIISGKRSRGYYNQNHTQNLIGHAWELWKKGRPLELVDKSIEKSIFQSQILRCIHVSLLCVQQNPDDRPGMSSVLLMLVSEVELPEPKQPGFFGKYSGEGDSSTSKQQQSSTNEITITLLEAR 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1712g00003 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 479 591 - -
Vium1712g00003 832 MobiDBLite consensus disorder prediction 807 832 - -
Vium1712g00003 832 SUPERFAMILY Protein kinase-like (PK-like) 501 796 IPR011009 -
Vium1712g00003 832 Gene3D - 27 155 IPR036426 -
Vium1712g00003 832 SMART blect_4 37 158 IPR001480 -
Vium1712g00003 832 CDD B_lectin 42 158 IPR001480 -
Vium1712g00003 832 Pfam Protein tyrosine and serine/threonine kinase 517 784 IPR001245 GO:0004672|GO:0006468
Vium1712g00003 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Vium1712g00003 832 Gene3D Transferase(Phosphotransferase) domain 1 592 795 - -
Vium1712g00003 832 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 777 - -
Vium1712g00003 832 Pfam PAN-like domain 347 415 IPR003609 -
Vium1712g00003 832 SMART ntp_6 350 429 IPR003609 -
Vium1712g00003 832 PIRSF SRK 1 832 IPR024171 GO:0004674
Vium1712g00003 832 CDD STKc_IRAK 522 787 - -
Vium1712g00003 832 SMART serkin_6 516 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1712g00003 832 ProSitePatterns Protein kinases ATP-binding region signature. 522 544 IPR017441 GO:0005524
Vium1712g00003 832 ProSiteProfiles EGF-like domain profile. 292 328 IPR000742 -
Vium1712g00003 832 CDD PAN_AP_plant 345 429 - -
Vium1712g00003 832 MobiDBLite consensus disorder prediction 798 832 - -
Vium1712g00003 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 155 - -
Vium1712g00003 832 ProSiteProfiles Protein kinase domain profile. 516 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1712g00003 832 Gene3D Phosphorylase Kinase; domain 1 464 591 - -
Vium1712g00003 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 592 795 - -
Vium1712g00003 832 Pfam S-locus glycoprotein domain 216 325 IPR000858 GO:0048544
Vium1712g00003 832 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 189 IPR036426 -
Vium1712g00003 832 Pfam Domain of unknown function (DUF3403) 790 832 IPR021820 GO:0004674
Vium1712g00003 832 ProSiteProfiles Bulb-type lectin domain profile. 32 152 IPR001480 -
Vium1712g00003 832 ProSiteProfiles PAN/Apple domain profile. 347 431 IPR003609 -
Vium1712g00003 832 Pfam D-mannose binding lectin 79 184 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1712g00003 Vium-Chr1712 56035 60542 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1712g00003 431 804 Receptor kinase-like Gene Family AT4G23190 51.309 4.74e-132 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium1712g00003 PK_Tyr_Ser-Thr 6.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1712g00003 - - gmx:100778155 1412.13