Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1712g00002 ATGAAGAACCTAATGTCTTTAATGAGAATCATTTTTCTGTGTTATCATATGCTTCTCTGTCTTTGTGAAATTTCCTTGGCACTTGACTCCATTTCTCAAGACCTGTCTCTAAGTGATGATGTTGATAACACCACCTTGGTTTCGAAAGATGGAACCTTCGAACTTGGATTCTTCACCCCAGGAAATTCCCAGAAACGTTACCTGGGGGTTTGGTACAGGAAAATCCCTATTCAAACTGTGGTTTGGGTTGCAAACAGGCTCAATCCGATCAATGATTCATCTGGCATCTTGAGGATGAACACCAGCAGTGGGAACCTTGTCCTCACACAGGATGACAAAGTTGTTTGGACTACAACCTCTTTGAAAAAAGCAGAAAGCCCAGTAGCCCTTCTCTTGGATTCTGGCAATCTTGTGATAAGAGATGAGAAAGATGCAAACATTGAGGCCTACTTGTGGCAGAGCTTTGACTACCCTACTGATACCTTCTTACCAGAAATGAAGTTTGGTTGGGACTTGAGAACTGGTCTCAATAGGAAGATAACAGCTTGGAAGAGTCCTGATGATCCATCTCCCAGTGACTTCTCTTTTGGTATGGTGCTCAACAGCTATCCCGAAGCATACATGATGAAGGGTAACGAAAAGTTCTACCGAAGTGGACCATGGAATGGCTTGCATTCAAGTGGTTCACCACATGTTAGGGCCAACCCCATTTATGACTTCAGGTTTGTTTTCAACGAAGCTGAAGTTTACTACACATATAGCCTCAAGAACTCCTCTGTGATCTCGAGGTTGGTGCTGAATGCAACAAGCTATGTTCGCAGACGGTATGTCTGGATTGAATCAAAGCAAATATGGGAGGTCTACACTTCAGTGCCACTGGACTTATGTGACAGTTATTCCCTTTGTGGAGCTAATGCAAATTGTGTTATATCAGATTCACCTGTGTGCCAATGTTTGGAAGGGTTCAAACCTAAGTACCCTCAAGCATGGAACTCAATGGATTGGTCTCATGGATGTGTCCGCAATAAGGAATTAAGCTGTGAGAACAAACACAAGGATGAATTTATCAAACTGCCTGAGATGAAAACGCCTGACACTACACATAGTTGGCTAGATCAGACAATTGGGCTAGAGGAATGCAGAGCTAAGTGCTTGGATAACTGTTCCTGTATGGCTTATGCAAATTCAGATATCAGTGGACAAGGAAGTGGTTGTGCCATGTGGTTTGGTGATCTCCTTGATATGAGACAGTTTTCAGATGGAGGCCAGGAAGTATATGTTCGAGTGGATGCTTCAGAATTAGAACACACCAGTAAGAGCCACAAGAAGGGAAGAGTCTTGGCTGCAGTGACAGTTTCTTTAGCCGTGGCAACAGTTTCTGGTATTCTAGTAATACTTGGCTTGTGTTATAGAAAGAAATCGCGCGCCAATGTGAAAGAGAGATCAGACTTCAGTATCAAATCATATCAAAACAGTGCAATGGAAGTGGGTGATATGGACCTACCAGTTTTTGACTTGTCAACTATAGCCAAAGCCACTAACAACTTTACACTCAAGAACAAAATTGGAGAAGGTGGATTTGGATCTGTATACAGGGGAACACTAGCAGATGGACTGGAAATTGCTGTGAAGAGACTTTCACAAAGTTCAGGACAAGGATTGACTGAATTTAAGAACGAAGTAAAATTGATTGCAAAACTCCAACACCGCAATCTTGTAAAGCTTCTTGGATGTTGCCTTGAAGAAGAGGAAAAAATGTTGGTTTATGAGTACATGATAAATGGCAGCCTGAACTCATTTATTTTTGATCAGGAAAAGAGTGAGTTACTAGACTGGTCAAAGCGCTTCAACATTATATGTGGAATTACCAAGGGCCTTCTCTACCTTCATCAGGATTCCAGGCTAAGGATTATTCATAGAGATCTCAAAGCAAGTAATGTTTTACTTGATAATGAGTTGAACCCCAAAATTTCAGATTTTGGCATGGCTAGAATATTTGGTGGAGATCAGAAAGAAGGAAACACTGGGAGAATAGTTGGTACTTATGGCTACATGGCACCAGAATATGCAACTGATGGGCTATTTTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTTTATTGATGGAGATTATATCTGGGAAGAGAAGCAGAGGGTATTACAATCAGAACCACACCCAAAATCTCATAGGCCATAATCCAGATGATAGGCCTGGAATGTCTAGTGTGCTCTTGATGTTAGTGAGTGAGGTTGAATTGCCTGAGCCAAAGCAACCAGGATTCTTTGGTAAATATTCAGGTGAAGGAGACTCCTCTACAAGCAAGCAGCAACAAAGTTCAACAAACGAAATAACCATTACCTTATTAGAAGCCCGTTGA 2379 0.4161 MKNLMSLMRIIFLCYHMLLCLCEISLALDSISQDLSLSDDVDNTTLVSKDGTFELGFFTPGNSQKRYLGVWYRKIPIQTVVWVANRLNPINDSSGILRMNTSSGNLVLTQDDKVVWTTTSLKKAESPVALLLDSGNLVIRDEKDANIEAYLWQSFDYPTDTFLPEMKFGWDLRTGLNRKITAWKSPDDPSPSDFSFGMVLNSYPEAYMMKGNEKFYRSGPWNGLHSSGSPHVRANPIYDFRFVFNEAEVYYTYSLKNSSVISRLVLNATSYVRRRYVWIESKQIWEVYTSVPLDLCDSYSLCGANANCVISDSPVCQCLEGFKPKYPQAWNSMDWSHGCVRNKELSCENKHKDEFIKLPEMKTPDTTHSWLDQTIGLEECRAKCLDNCSCMAYANSDISGQGSGCAMWFGDLLDMRQFSDGGQEVYVRVDASELEHTSKSHKKGRVLAAVTVSLAVATVSGILVILGLCYRKKSRANVKERSDFSIKSYQNSAMEVGDMDLPVFDLSTIAKATNNFTLKNKIGEGGFGSVYRGTLADGLEIAVKRLSQSSGQGLTEFKNEVKLIAKLQHRNLVKLLGCCLEEEEKMLVYEYMINGSLNSFIFDQEKSELLDWSKRFNIICGITKGLLYLHQDSRLRIIHRDLKASNVLLDNELNPKISDFGMARIFGGDQKEGNTGRIVGTYGYMAPEYATDGLFSVKSDVFSFGVLLMEIISGKRSRGYYNQNHTQNLIGHNPDDRPGMSSVLLMLVSEVELPEPKQPGFFGKYSGEGDSSTSKQQQSSTNEITITLLEAR 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1712g00002 792 Pfam S-locus glycoprotein domain 216 325 IPR000858 GO:0048544
Vium1712g00002 792 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 727 - -
Vium1712g00002 792 SMART blect_4 37 158 IPR001480 -
Vium1712g00002 792 CDD B_lectin 42 158 IPR001480 -
Vium1712g00002 792 Pfam Domain of unknown function (DUF3403) 750 792 IPR021820 GO:0004674
Vium1712g00002 792 PIRSF SRK 730 792 IPR024171 GO:0004674
Vium1712g00002 792 PIRSF SRK 1 733 IPR024171 GO:0004674
Vium1712g00002 792 Gene3D Phosphorylase Kinase; domain 1 463 591 - -
Vium1712g00002 792 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Vium1712g00002 792 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 155 - -
Vium1712g00002 792 SUPERFAMILY Protein kinase-like (PK-like) 501 755 IPR011009 -
Vium1712g00002 792 Pfam PAN-like domain 347 415 IPR003609 -
Vium1712g00002 792 SMART serkin_6 516 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1712g00002 792 MobiDBLite consensus disorder prediction 758 792 - -
Vium1712g00002 792 Gene3D - 27 155 IPR036426 -
Vium1712g00002 792 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 479 591 - -
Vium1712g00002 792 SMART ntp_6 350 429 IPR003609 -
Vium1712g00002 792 Gene3D Transferase(Phosphotransferase) domain 1 592 755 - -
Vium1712g00002 792 ProSitePatterns Protein kinases ATP-binding region signature. 522 544 IPR017441 GO:0005524
Vium1712g00002 792 ProSiteProfiles EGF-like domain profile. 292 328 IPR000742 -
Vium1712g00002 792 CDD PAN_AP_plant 345 429 - -
Vium1712g00002 792 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 189 IPR036426 -
Vium1712g00002 792 CDD STKc_IRAK 522 716 - -
Vium1712g00002 792 Pfam Protein tyrosine and serine/threonine kinase 517 722 IPR001245 GO:0004672|GO:0006468
Vium1712g00002 792 MobiDBLite consensus disorder prediction 767 792 - -
Vium1712g00002 792 FunFam Lectin-domain containing receptor kinase A4.3 592 756 - -
Vium1712g00002 792 ProSiteProfiles Protein kinase domain profile. 516 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1712g00002 792 ProSiteProfiles Bulb-type lectin domain profile. 32 152 IPR001480 -
Vium1712g00002 792 Pfam D-mannose binding lectin 79 184 IPR001480 -
Vium1712g00002 792 ProSiteProfiles PAN/Apple domain profile. 347 431 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1712g00002 Vium-Chr1712 56035 60542 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1712g00002 431 764 Receptor kinase-like Gene Family AT4G23190 46.597 1.52e-108 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium1712g00002 PK_Tyr_Ser-Thr 5.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1712g00002 - - gmx:100778155 1328.54