Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1711g00001 ATGGCTCATGAGGATTGGGATCTCTTTGCCATCGTTAGAAGTTGTAAAGCTGCCACCTTTACTGCCACCACAACCACACCAAACCCACCCACCGTGACTTCCACCACCACTCCCAGATCTCCAAACACCACCTCTTGCTTCGATTCCAGCCACGAGAATGCATCATTCTCTTTTCCCAATCTTCTGCAACCACCAACCAATGAGTCTCAAGAGCTTCACCAGTTGCTAATAAACTTCAACCCCACCACCACCACCACCATTTCTAGCACTATCACTAGTGCTATTGGCATCAATCCCAATTCCACTTTTTCTGACGTTGCGGGATTCATTGGACAACAGCATATACAACAAGGTCATCACCATCATCTTGTTCCTGCTCCCACAAATCACACCTCCATTGGAGCACCCTCCACTACTGGTTTTGACAGATTCCAAGAACAGCACCACCAACAGCAACATCAATCCCAAACTCCAGAACAACAGCAACGAAAGCAAAACCTGCCTCAACTTCAAGCAACCCAAACAAGTCCTATCCTTTCACCAACTACACAACCACAGACACCCAGATCAAGAAAGAGAAAAAACCACCAGAAGAAAATTGTGCGTCATGTAACCGCAGACAACCTCTCGGCAGACTCATGGGCATGGCGAAAATATGGTCAAAAACCAATCAAAGGCTCTCCGTATCCAAGGAACTATTACAGATGCAGTAGCTGCAAAGGCTGTGCTGCGAGAAAGCAAGTGGAGCGAAGCAACACCGAACCCAACATGTTCATCGTCACCTACACCGGCGAACACAAACACGCTAAACCCGTTCACCGTAACTCCCTCGCCGGCAGCACCCGAACCAAGCCGTCTCCAACCGGTTTACCCGAAGCCAACGAAGCTGTTTCTGGTATCAAAATAGAGAACGCGTGTTCTTCGACTTCTGAGCTTTCTACGACGTCGTTGAAGTCTGGCACGCCGGAAAATGAGGAAACAGTCGCCGACGGCGAACCCGATTTCCCTGAGATGGAAGTTGATCCTGACGCGTTGTCTGACAACGACTACGACCTTTTGATACCCAATACTGGTGCCATGTCGGACGCTGTTCTCTTGGGGTTAACCAATGGAGCTCAAACAAAGGGATCGGATCGGAATAGCGAATCCGGGTTGACCCAGTCCAAATCAGACCCATTTTCCAACACGGTGTAG 1194 0.4916 MAHEDWDLFAIVRSCKAATFTATTTTPNPPTVTSTTTPRSPNTTSCFDSSHENASFSFPNLLQPPTNESQELHQLLINFNPTTTTTISSTITSAIGINPNSTFSDVAGFIGQQHIQQGHHHHLVPAPTNHTSIGAPSTTGFDRFQEQHHQQQHQSQTPEQQQRKQNLPQLQATQTSPILSPTTQPQTPRSRKRKNHQKKIVRHVTADNLSADSWAWRKYGQKPIKGSPYPRNYYRCSSCKGCAARKQVERSNTEPNMFIVTYTGEHKHAKPVHRNSLAGSTRTKPSPTGLPEANEAVSGIKIENACSSTSELSTTSLKSGTPENEETVADGEPDFPEMEVDPDALSDNDYDLLIPNTGAMSDAVLLGLTNGAQTKGSDRNSESGLTQSKSDPFSNTV 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1711g00001 397 MobiDBLite consensus disorder prediction 327 346 - -
Vium1711g00001 397 MobiDBLite consensus disorder prediction 117 199 - -
Vium1711g00001 397 MobiDBLite consensus disorder prediction 130 188 - -
Vium1711g00001 397 Pfam WRKY DNA -binding domain 212 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1711g00001 397 MobiDBLite consensus disorder prediction 371 397 - -
Vium1711g00001 397 SUPERFAMILY WRKY DNA-binding domain 205 271 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1711g00001 397 Gene3D WRKY domain 193 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1711g00001 397 MobiDBLite consensus disorder prediction 301 323 - -
Vium1711g00001 397 MobiDBLite consensus disorder prediction 23 50 - -
Vium1711g00001 397 FunFam WRKY transcription factor 22 193 264 - -
Vium1711g00001 397 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 349 IPR044810 GO:0003700
Vium1711g00001 397 ProSiteProfiles WRKY domain profile. 205 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1711g00001 397 MobiDBLite consensus disorder prediction 267 352 - -
Vium1711g00001 397 SMART WRKY_cls 210 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1711g00001 Vium-Chr1711 8687 10564 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1711g00001 189 288 WRKY Transcription Factor Family AT5G52830 78.000 7.02e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium1711g00001 WRKY 6.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1711g00001 - - gmx:100796829 496.893