Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1709g00005 ATGTCGGTCTCCTGCTCCAACTGCGTTCCCGACTCCTTCCTTCTCTGCGGCGAGGACTCCTCCGGAGTCTTGTCTGGAGAATCGCCGGAATGTTCCTCCGACCTCGATTCCTCGCCGCCGTCGGAGGAGGAGTCCATCGCTGGATTCATCGAAGACGAACGACACTTCGTTCCCGGATTCGAATACCTCAACAGGTTCCAATCACGCTCTCTCGACGCCTCGGCCAGAGAAGAATCCGTTGCATGGATTCTCAAGGTGCAGGCTTATTACGCTTTTCAACCTCTCACGGCTTATCTTTCCGTTAATTACATGGATCGATTCTTGAATTCTCGGCCATTGCCGCAAACCAATGGGTGGCCATTGCAACTTCTATCAGTTGCGTGCTTGTCTTTAGCGGCAAAGATGGAGGAACCTCTAGTTCCGTCACTGTTGGACCTTCAGGTAGAAGGTGCCAAATACCTATTTGAGCCAATAACAATTAGAAGAATGGAGCTACTTGTCCTGGGCGTCCTGGATTGGAGACTAAGATCGGTTACTCCATTTAGCTTCCTCGATTTCTTTGCCTGCAAGTTAGATTCAACTGGAACTCTTACTGGGTTCCTCATCTCACGTGCTACGCAAATTATCTTGTCTAATGTCCAAGAGGCTAGTTTTCTTGCCTATTGGCCATCATGCATAGCTGCAGCGGCCATTCTCCATGCAGCTAACGAAATTCCTAATTGGTCTCTCGTTAGACCCGAGGATGCCGAGTCGTGGTGCGAGGGGCTAATAAAGGAGAAAGTTATAGGATGCTACCAATTAATGCAAGAACTTGTTATTGACAATAACCGGAGGAAACCCCCTAAAGTGTTACCGCAGCTGCGAGTGACATCTCGGCCCCTTATAAGGTCTAGTGTCTCGTCATTCTCAGAATCATCCTCTTCTCCTTCATCCTCATTGTCTTGTAAAAGGAGGAAATTAAATAACTGTTTGTGGGTAGATGATGACAAAGGAAACTCCCAGTGA 1005 0.4826 MSVSCSNCVPDSFLLCGEDSSGVLSGESPECSSDLDSSPPSEEESIAGFIEDERHFVPGFEYLNRFQSRSLDASAREESVAWILKVQAYYAFQPLTAYLSVNYMDRFLNSRPLPQTNGWPLQLLSVACLSLAAKMEEPLVPSLLDLQVEGAKYLFEPITIRRMELLVLGVLDWRLRSVTPFSFLDFFACKLDSTGTLTGFLISRATQIILSNVQEASFLAYWPSCIAAAAILHAANEIPNWSLVRPEDAESWCEGLIKEKVIGCYQLMQELVIDNNRRKPPKVLPQLRVTSRPLIRSSVSSFSESSSSPSSSLSCKRRKLNNCLWVDDDKGNSQ 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1709g00005 334 Gene3D - 50 238 - -
Vium1709g00005 334 SUPERFAMILY Cyclin-like 37 175 IPR036915 -
Vium1709g00005 334 SMART Cyclin_C_2 178 311 IPR004367 -
Vium1709g00005 334 Pfam Cyclin, C-terminal domain 178 283 IPR004367 -
Vium1709g00005 334 FunFam D2/4-type cyclin 59 176 - -
Vium1709g00005 334 SMART cyclin_7 81 169 IPR013763 -
Vium1709g00005 334 Pfam Cyclin, N-terminal domain 48 175 IPR006671 -
Vium1709g00005 334 CDD CYCLIN_AtCycD-like_rpt1 75 173 - -
Vium1709g00005 334 ProSitePatterns Cyclins signature. 76 107 IPR006671 -
Vium1709g00005 334 Gene3D - 59 176 - -
Vium1709g00005 334 CDD CYCLIN_AtCycD-like_rpt2 178 268 - -
Vium1709g00005 334 PANTHER CYCLINS 51 275 IPR039361 -
Vium1709g00005 334 SUPERFAMILY Cyclin-like 159 278 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1709g00005 Vium-Chr1709 67527 71317 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1709g00005 1 334 Core Cell Cycle Gene Families AT1G70210 64.793 1.79e-141 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1709g00005 K18810 - gmx:100775224 554.673