Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1709g00004 ATGTCGGTCTCCTGCTCCAACTGCGTTCCCGACTCCTTCCTTCTCTGCGGCGAGGACTCCTCCGGAGTCTTGTCTGGAGAATCGCCGGAATGTTCCTCCGACCTCGATTCCTCGCCGCCGTCGGAGGAGGAGTCCATCGCTGGATTCATCGAAGACGAACGACACTTCGTTCCCGGATTCGAATACCTCAACAGGTTCCAATCACGCTCTCTCGACGCCTCGGCCAGAGAAGAATCCGTTGCATGGATTCTCAAGCAAACCAATGGGTGGCCATTGCAACTTCTATCAGTTGCGTGCTTGTCTTTAGCGGCAAAGATGGAGGAACCTCTAGTTCCGTCACTGTTGGACCTTCAGGTAGAAGGTGCCAAATACCTATTTGAGCCAATAACAATTAGAAGAATGGAGCTACTTGTCCTGGGCGTCCTGGATTGGAGACTAAGATCGGTTACTCCATTTAGCTTCCTCGATTTCTTTGCCTGCAAGTTAGATTCAACTGGAACTCTTACTGGGTTCCTCATCTCACGTGCTACGCAAATTATCTTGTCTAATGTCCAAGAGGCTAGTTTTCTTGCCTATTGGCCATCATGCATAGCTGCAGCGGCCATTCTCCATGCAGCTAACGAAATTCCTAATTGGTCTCTCGTTAGACCCGAGGATGCCGAGTCGTGGTGCGAGGGGCTAATAAAGGAGAAAGTTATAGGATGCTACCAATTAATGCAAGAACTTGTTATTGACAATAACCGGAGGAAACCCCCTAAAGTGTTACCGCAGCTGCGAGTGACATCTCGGCCCCTTATAAGGTCTAGTGTCTCGTCATTCTCAGAATCATCCTCTTCTCCTTCATCCTCATTGTCTTGTAAAAGGAGGAAATTAAATAACTGTTTGTGGGTAGATGATGACAAAGGAAACTCCCAGTGA 918 0.4858 MSVSCSNCVPDSFLLCGEDSSGVLSGESPECSSDLDSSPPSEEESIAGFIEDERHFVPGFEYLNRFQSRSLDASAREESVAWILKQTNGWPLQLLSVACLSLAAKMEEPLVPSLLDLQVEGAKYLFEPITIRRMELLVLGVLDWRLRSVTPFSFLDFFACKLDSTGTLTGFLISRATQIILSNVQEASFLAYWPSCIAAAAILHAANEIPNWSLVRPEDAESWCEGLIKEKVIGCYQLMQELVIDNNRRKPPKVLPQLRVTSRPLIRSSVSSFSESSSSPSSSLSCKRRKLNNCLWVDDDKGNSQ 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1709g00004 305 SMART Cyclin_C_2 149 282 IPR004367 -
Vium1709g00004 305 Pfam Cyclin, C-terminal domain 149 254 IPR004367 -
Vium1709g00004 305 Gene3D - 148 209 - -
Vium1709g00004 305 CDD CYCLIN_AtCycD-like_rpt2 149 239 - -
Vium1709g00004 305 PANTHER CYCLINS 62 246 IPR039361 -
Vium1709g00004 305 SUPERFAMILY Cyclin-like 130 249 IPR036915 -
Vium1709g00004 305 SUPERFAMILY Cyclin-like 37 146 IPR036915 -
Vium1709g00004 305 Pfam Cyclin, N-terminal domain 92 146 IPR006671 -
Vium1709g00004 305 Gene3D - 87 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1709g00004 Vium-Chr1709 67527 71318 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1709g00004 1 305 Core Cell Cycle Gene Families AT1G70210 57.692 7.31e-116 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1709g00004 K18810 - gmx:100780369 485.337