Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium16g00002 ATGATAGGGATATGGGAAATGGTAGGATCGGGTAAAACTACCATAGCAAAAGCCATCTATAATCGAATTTATCATTTATTTATTGGCAAGAGTTTTGTTGAAAATCTTAAAAAAGTTTGGGAACCAGTAGATAGATGGCATCTTCATTTGCAAGAGCAATTTCTTTACGATGTCCTAAAATCCAAGTTCAGATTGCAAACCACTTGGATGGGAAGAGTTATGATCGAGAACGAACTTTCTCGAAAAAAGTTGCTCATTGTGCTTGATGATGTGAATGAGATAGGCCAATTACAAAACCTATGTGGGAGTCATCATTGGTTCGGTAAAGGAACTGTTATAATCGTTACAACTAGAGATGTTCACTTGCTGAACCGGCTCAAACTTAATTATGTTTATAGAATGTCTGATATGAAGGAAAATGAGTCCCTTGGTTGTCATGGCTTTAGTGAAGCAAAAACAAGAAAAGACTTGAATGAACTTGTAAGAAACGTAGTTGTTTATTGTGGAGGACTATCACTAGCTCTATAA 528 0.3598 MIGIWEMVGSGKTTIAKAIYNRIYHLFIGKSFVENLKKVWEPVDRWHLHLQEQFLYDVLKSKFRLQTTWMGRVMIENELSRKKLLIVLDDVNEIGQLQNLCGSHHWFGKGTVIIVTTRDVHLLNRLKLNYVYRMSDMKENESLGCHGFSEAKTRKDLNELVRNVVVYCGGLSLAL 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium16g00002 175 Gene3D - 1 131 IPR027417 -
Vium16g00002 175 PRINTS Disease resistance protein signature 168 175 - -
Vium16g00002 175 PRINTS Disease resistance protein signature 1 16 - -
Vium16g00002 175 PRINTS Disease resistance protein signature 78 92 - -
Vium16g00002 175 Pfam NB-ARC domain 2 175 IPR002182 GO:0043531
Vium16g00002 175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 175 IPR027417 -
Vium16g00002 175 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 175 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium16g00002 Vium-Chr16 12397 13466 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium16g00002 2 175 WRKY Transcription Factor Family AT5G45050 30.337 8.87e-21 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium16g00002 - - vum:124837257 360.918