Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium16g00001 ATGGAGTTCGCTTCTTCTTCATCATCATCGTCTTCATCGTTCTTAAAATCAGAACCCCATTTCATATACGATGTGTTCATCAACTTTGGGGGAGAAGACATCGGTAGAAGGTTCCTTTCTCATCTCCATTGTGCCCTTTTACAAGCTCAAGTCAAAACTTTTATTAGCGAGGAAAATGGTCAAGAGGAAACGAAGCTGGAAGAACACATGCGAGCAATAGCAGCCTCTAAGATTGCAATAATCGTTTTCTCCAAAACATATGCTGAATCTAACAGCTGTCTTCTTGAGCTTGAAGAAAACATTGAATGCCTAAAAACATTTGGCCAAATAGTTTTGCCCGTATTTTACGAGATTGATCCATTGGATGTTCGTGATCAGACAAACGATTTTGGAAAAGCGTTGGGACAAACTGCAAACAAAAGTTATTCAGGAGAACAACTGGAACATGCATTGTCCAGGTGGAACCGTGCCCTAGCCATAGCTTCAGGTATCACTGGCTGGGATCTCAGAAATTTCAGGCATGATGCTGAATTTGTGGAGGTAATTGTTAATCGCGTTCAGACATTACTGGACTATAAAGACTTAGTTATTACCCAATTTCCTGTTGGATTAGAGTTTCACGTGGAAAAGGTGATTGGATGCATTGAAAATCATTCCACCAAAGTGTGTATGATAGGGATATGGGAAATGGTAGGATCGGGTAAAACTACCATAGCAAAAGCCATCTATAATCGAATTTATCATTTATTTATTGGCAAGAGTTTTGTTGAAAATCTTAAAAAAGTTTGGGAACCAGTAGATAGATGGCATCTTCATTTGCAAGAGCAATTTCTTTACGATGTCCTAAAATCCAAGTTCAGATTGCAAACCACTTGGATGGGAAGAGTTATGATCGAGAACGAACTTTCTCGAAAAAAGTTGCTCATTGTGCTTGATGATGTGAATGAGATAGGCCAATTACAAAACCTATGTGGGAGTCATCATTGGTTCGGTAAAGGAACTGTTATAATCGTTACAACTAGAGATGTTCACTTGCTGAACCGGCTCAAACTTAATTATGTTTATAGAATGTCTGATATGAAGGAAAATGAGTCCCTTGGTTGTCATGGCTTTAGTGAAGCAAAAACAAGAAAAGACTTGAATGAACTTGTAAGAAACGTAGTTGTTTATTGTGGAGGACTATCACTAGCTCTATAA 1197 0.3843 MEFASSSSSSSSSFLKSEPHFIYDVFINFGGEDIGRRFLSHLHCALLQAQVKTFISEENGQEETKLEEHMRAIAASKIAIIVFSKTYAESNSCLLELEENIECLKTFGQIVLPVFYEIDPLDVRDQTNDFGKALGQTANKSYSGEQLEHALSRWNRALAIASGITGWDLRNFRHDAEFVEVIVNRVQTLLDYKDLVITQFPVGLEFHVEKVIGCIENHSTKVCMIGIWEMVGSGKTTIAKAIYNRIYHLFIGKSFVENLKKVWEPVDRWHLHLQEQFLYDVLKSKFRLQTTWMGRVMIENELSRKKLLIVLDDVNEIGQLQNLCGSHHWFGKGTVIIVTTRDVHLLNRLKLNYVYRMSDMKENESLGCHGFSEAKTRKDLNELVRNVVVYCGGLSLAL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium16g00001 398 PRINTS Disease resistance protein signature 224 239 - -
Vium16g00001 398 PRINTS Disease resistance protein signature 391 398 - -
Vium16g00001 398 PRINTS Disease resistance protein signature 301 315 - -
Vium16g00001 398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 398 IPR027417 -
Vium16g00001 398 Gene3D - 193 354 IPR027417 -
Vium16g00001 398 Gene3D - 16 192 IPR035897 -
Vium16g00001 398 ProSiteProfiles TIR domain profile. 21 190 IPR000157 GO:0007165
Vium16g00001 398 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 167 IPR035897 -
Vium16g00001 398 FunFam Disease resistance protein (TIR-NBS-LRR class) 20 192 - -
Vium16g00001 398 Pfam NB-ARC domain 206 398 IPR002182 GO:0043531
Vium16g00001 398 SMART till_3 22 164 IPR000157 GO:0007165
Vium16g00001 398 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 398 IPR044974 GO:0006952
Vium16g00001 398 Pfam TIR domain 23 186 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium16g00001 Vium-Chr16 6616 8146 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium16g00001 23 366 WRKY Transcription Factor Family AT4G12020 28.448 1.15e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium16g00001 - - vra:106773334 699.123