LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium169g00002	ATGGTGGTGACACAAACATGCTTTGGTTTCTTCTTATTGCTAAGTTGGGGAATAATAGTTACAAAGGCAAAAGCACAGATATTTATGGGAAGTAATTGCCAAAACACCTCCCCAGAGCCTCTCAGCAGTGCATACCAAGCCAATCTTGATAAGATCCTCGCATGGATGTCTTCTGATGCAGCCACAAGCAAAGGCTATAACCACACCCGCATAGGCATCGACACCCCAGTGTATGGCCAATATGAGTGCCGTGGTGATGTTGCTGAAAACTTTTGTCAATTCTGTGTCTCCTTCGCAAGCAGAGAAGCCCCTAAACGCTGCCCCAATAGGGTATCTGCTATAGTGTGGTATGAGTACTGCATGCTAAGGTATTCTAATGAGAGCTTCTTTGGGAAAATTCTCACACACCCCACATGGCATGGGTTAGGAACAAAAAATGTATCCAACATGGAAGAGGTTCGTAGAGGTGAAGGTTTTGTGAAAAGTATGATCACAAAAGCAACTCAGGAAACCAACCACTTGTACTATTTGGGTAGCTTCAATTTGAGTTCCACTCAGAAAAGGTTTGGCATGGTGCACTGCGGCAGAGATCTCTCAAATGAATCTTGCAGACAGTGTTTGGAGGCTTTATTAGAACAAACTCAAAAATGTTGCGAACAAAATATAGGATGGTTTATTTGGTCTGGAACCTGTATGATAAGGTATGATGATCAAATGTTCTACCGTCTTAGCAACCAAACATCTTCACTTCCACCGTCAAATGATGAAACAGATTGGTTTCGTCCATCTTCGTTTCACAAAATTCAAACAGAGGAATCATGGTCCGCAGAGCTGCCTATAATCCCATTAACCACAATTCTGCAGAGTACTGATAACTTTTCAGAAGCATGTAAATTAGGAGAAGGAGGATTTGGCACTGTTTACAAGGGAATTCTAGGAGATGGAACTCAAATTGCAGTCAAAAGGCTCTCAAAGTTTTCAGGTCAAGGCTCGGAGGAGTTTAATAACGAAGTCCTGTTCATAGCTAATTTGCAACATCGCAATCTTGTGAGACTTTTGGCATGCTGCTTGGACGAAAATGAAAGCATACTTGTATATGAGTATTTGCCGAATAAAAGTTTAGACTTTCACCTCTTTGATGATGAGAAGAGAAAGCAGTTTGATTGGAAACTAAGATTAAGGATTATCAATGGAATAGCAAAAGGTATTTTATACCTTCATGAGGACTCCAGAGTGACAGTAATTCATAGAGATCTCAAAGCTAGCAATGTTCTATTAGACCATGTCATGAATCCCAAAATATCAGATTTTGGATTGGCAAGAGCATTTGAAATAGGACAGAAACAGGCAAAGACAAAACGAGTAATGGGCACCTACGGATACATGGCTCCAGAGTATGTTATGCAAGGACTGTTTTCAGTTAAATCTGATGTTTTCAGCTTTGGAGTTCTTGTTCTAGAGATCATTTATGGGAGAAAGAACAATGGATTGTATATGTCAGAACATGGTCAAACTCTTCTTTTATATGCTTGGAGAACATGGGGTGCAGGAAAATGTTTGGAAACGATTGATCCAATGCTAGAAAAGTCCTTCTTAGGCAGTGAAGTTGAGAGGTGTATACACATTGGTTTGTTGTGTGTTCAAGAAGATGCAAAAGATAGACCAACAATGTCTCAGGTTGTTTTAATGCTGGCAAGTGATACAATGATTCTTCCAAAACCCAAGCACCCTGCATTCTCAATTGGAATAATGGCCTCTGAGGAAGTGTATACATCAAAAAGTTCCAAGAATGTTTCTAATAATGATCTAACTGTCTCTGTTTCTTTACCAAGGTGA	1836	0.4009	MVVTQTCFGFFLLLSWGIIVTKAKAQIFMGSNCQNTSPEPLSSAYQANLDKILAWMSSDAATSKGYNHTRIGIDTPVYGQYECRGDVAENFCQFCVSFASREAPKRCPNRVSAIVWYEYCMLRYSNESFFGKILTHPTWHGLGTKNVSNMEEVRRGEGFVKSMITKATQETNHLYYLGSFNLSSTQKRFGMVHCGRDLSNESCRQCLEALLEQTQKCCEQNIGWFIWSGTCMIRYDDQMFYRLSNQTSSLPPSNDETDWFRPSSFHKIQTEESWSAELPIIPLTTILQSTDNFSEACKLGEGGFGTVYKGILGDGTQIAVKRLSKFSGQGSEEFNNEVLFIANLQHRNLVRLLACCLDENESILVYEYLPNKSLDFHLFDDEKRKQFDWKLRLRIINGIAKGILYLHEDSRVTVIHRDLKASNVLLDHVMNPKISDFGLARAFEIGQKQAKTKRVMGTYGYMAPEYVMQGLFSVKSDVFSFGVLVLEIIYGRKNNGLYMSEHGQTLLLYAWRTWGAGKCLETIDPMLEKSFLGSEVERCIHIGLLCVQEDAKDRPTMSQVVLMLASDTMILPKPKHPAFSIGIMASEEVYTSKSSKNVSNNDLTVSVSLPR	611

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium169g00002	611	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	414	426	IPR008271	GO:0004672\|GO:0006468
	Vium169g00002	611	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	33	607	-	-
	Vium169g00002	611	Gene3D	-	138	240	IPR038408	-
	Vium169g00002	611	Gene3D	-	25	129	IPR038408	-
	Vium169g00002	611	FunFam	Cysteine-rich receptor-like protein kinase 28	29	128	-	-
	Vium169g00002	611	ProSitePatterns	Protein kinases ATP-binding region signature.	299	321	IPR017441	GO:0005524
	Vium169g00002	611	SMART	serkin_6	293	570	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium169g00002	611	ProSiteProfiles	Protein kinase domain profile.	293	579	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium169g00002	611	FunFam	Cysteine-rich receptor-like protein kinase 10	259	368	-	-
	Vium169g00002	611	CDD	STKc_IRAK	299	564	-	-
	Vium169g00002	611	ProSiteProfiles	Gnk2-homologous domain profile.	27	129	IPR002902	-
	Vium169g00002	611	SUPERFAMILY	Protein kinase-like (PK-like)	267	564	IPR011009	-
	Vium169g00002	611	ProSiteProfiles	Gnk2-homologous domain profile.	135	240	IPR002902	-
	Vium169g00002	611	Pfam	Protein tyrosine and serine/threonine kinase	297	562	IPR001245	GO:0004672\|GO:0006468
	Vium169g00002	611	Gene3D	Transferase(Phosphotransferase) domain 1	369	571	-	-
	Vium169g00002	611	Gene3D	Phosphorylase Kinase; domain 1	256	368	-	-
	Vium169g00002	611	FunFam	cysteine-rich receptor-like protein kinase 10	369	571	-	-
	Vium169g00002	611	Pfam	Salt stress response/antifungal	33	126	IPR002902	-
	Vium169g00002	611	Pfam	Salt stress response/antifungal	173	237	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium169g00002	Vium-Chr169	15070	18164	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium169g00002	8	611	Receptor kinase-like Gene Family	AT4G05200	38.772	2.77e-160	473

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vium169g00002		PK_Tyr_Ser-Thr	2e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium169g00002	-		-	var:108339140	826.624