LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium169g00001	ATGGTGGTGACACAAACATGCTTTGGTTTCTTCTTATTGCTAAGTTGGGGAATAATAGTTACAAAGGCAAAAGCACAGATATTTATGGGAAGTAATTGCCAAAACACCTCCCCAGAGCCTCTCAGCAGTGCATACCAAGCCAATCTTGATAAGATCCTCGCATGGATGTCTTCTGATGCAGCCACAAGCAAAGGCTATAACCACACCCGCATAGGCATCGACACCCCAGTGTATGGCCAATATGAGTGCCGTGGTGATGTTGCTGAAAACTTTTGTCAATTCTGTGTCTCCTTCGCAAGCAGAGAAGCCCCTAAACGCTGCCCCAATAGGGTATCTGCTATAGTGTGGTATGAGTACTGCATGCTAAGGTATTCTAATGAGAGCTTCTTTGGGAAAATTCTCACACACCCCACATGGCATGGGTTAGGAACAAAAAATGTATCCAACATGGAAGAGGTTCGTAGAGGTGAAGGTTTTGTGAAAAGTATGATCACAAAAGCAACTCAGGAAACCAACCACTTGTACTATTTGGGTAGCTTCAATTTGAGTTCCACTCAGAAAAGGTTTGGCATGGTGCACTGCGGCAGAGATCTCTCAAATGAATCTTGCAGACAGTGTTTGGAGGCTTTATTAGAACAAACTCAAAAATGTTGCGAACAAAATATAGGATGGTTTATTTGGTCTGGAACCTGTATGATAAGGTATGATGATCAAATGTTCTACCGTCTTAGCAACCAAACATCTTCACTTCCACCGTCAAATGATGAAACAGATAAACAAAGGGGTTATAGGATGTCAAAAATCTTAATCATAAGCATCAGTGTGATGGGGTCAATAATTATCTGTTTGAGCGTATATCGCTTGTGCTACAGGAGAAGAGTTAGAAAAGATTGGTTTCGTCCATCTTCGTTTCACAAAATTCAAACAGAGGAATCATGGTCCGCAGAGCTGCCTATAATCCCATTAACCACAATTCTGCAGAGTACTGATAACTTTTCAGAAGCATGTAAATTAGGAGAAGGAGGATTTGGCACTGTTTACAAGGGAATTCTAGGAGATGGAACTCAAATTGCAGTCAAAAGGCTCTCAAAGTTTTCAGGTCAAGGCTCGGAGGAGTTTAATAACGAAGTCCTGTTCATAGCTAATTTGCAACATCGCAATCTTGTGAGACTTTTGGCATGCTGCTTGGACGAAAATGAAAGCATACTTGTATATGAGTATTTGCCGAATAAAAGTTTAGACTTTCACCTCTTTGATGATGAGAAGAGAAAGCAGTTTGATTGGAAACTAAGATTAAGGATTATCAATGGAATAGCAAAAGGTATTTTATACCTTCATGAGGACTCCAGAGTGACAGTAATTCATAGAGATCTCAAAGCTAGCAATGTTCTATTAGACCATGTCATGAATCCCAAAATATCAGATTTTGGATTGGCAAGAGCATTTGAAATAGGACAGAAACAGGCAAAGACAAAACGAGTAATGGGCACCTACGGATACATGGCTCCAGAGTATGTTATGCAAGGACTGTTTTCAGTTAAATCTGATGTTTTCAGCTTTGGAGTTCTTGTTCTAGAGATCATTTATGGGAGAAAGAACAATGGATTGTATATGTCAGAACATGGTCAAACTCTTCTTTTATATGCTTGGAGAACATGGGGTGCAGGAAAATGTTTGGAAACGATTGATCCAATGCTAGAAAAGTCCTTCTTAGGCAGTGAAGTTGAGAGGTGTATACACATTGGTTTGTTGTGTGTTCAAGAAGATGCAAAAGATAGACCAACAATGTCTCAGGTTGTTTTAATGCTGGCAAGTGATACAATGATTCTTCCAAAACCCAAGCACCCTGCATTCTCAATTGGAATAATGGCCTCTGAGGAAGTGTATACATCAAAAAGTTCCAAGAATGTTTCTAATAATGATCTAACTGTCTCTGTTTCTTTACCAAGGTGA	1953	0.3984	MVVTQTCFGFFLLLSWGIIVTKAKAQIFMGSNCQNTSPEPLSSAYQANLDKILAWMSSDAATSKGYNHTRIGIDTPVYGQYECRGDVAENFCQFCVSFASREAPKRCPNRVSAIVWYEYCMLRYSNESFFGKILTHPTWHGLGTKNVSNMEEVRRGEGFVKSMITKATQETNHLYYLGSFNLSSTQKRFGMVHCGRDLSNESCRQCLEALLEQTQKCCEQNIGWFIWSGTCMIRYDDQMFYRLSNQTSSLPPSNDETDKQRGYRMSKILIISISVMGSIIICLSVYRLCYRRRVRKDWFRPSSFHKIQTEESWSAELPIIPLTTILQSTDNFSEACKLGEGGFGTVYKGILGDGTQIAVKRLSKFSGQGSEEFNNEVLFIANLQHRNLVRLLACCLDENESILVYEYLPNKSLDFHLFDDEKRKQFDWKLRLRIINGIAKGILYLHEDSRVTVIHRDLKASNVLLDHVMNPKISDFGLARAFEIGQKQAKTKRVMGTYGYMAPEYVMQGLFSVKSDVFSFGVLVLEIIYGRKNNGLYMSEHGQTLLLYAWRTWGAGKCLETIDPMLEKSFLGSEVERCIHIGLLCVQEDAKDRPTMSQVVLMLASDTMILPKPKHPAFSIGIMASEEVYTSKSSKNVSNNDLTVSVSLPR	650

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium169g00001	650	Gene3D	Transferase(Phosphotransferase) domain 1	408	610	-	-
	Vium169g00001	650	ProSiteProfiles	Protein kinase domain profile.	332	618	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium169g00001	650	Gene3D	Phosphorylase Kinase; domain 1	294	407	-	-
	Vium169g00001	650	ProSitePatterns	Protein kinases ATP-binding region signature.	338	360	IPR017441	GO:0005524
	Vium169g00001	650	Gene3D	-	25	129	IPR038408	-
	Vium169g00001	650	Gene3D	-	138	240	IPR038408	-
	Vium169g00001	650	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	453	465	IPR008271	GO:0004672\|GO:0006468
	Vium169g00001	650	Pfam	Salt stress response/antifungal	33	126	IPR002902	-
	Vium169g00001	650	Pfam	Salt stress response/antifungal	173	237	IPR002902	-
	Vium169g00001	650	Pfam	Protein tyrosine and serine/threonine kinase	336	601	IPR001245	GO:0004672\|GO:0006468
	Vium169g00001	650	ProSiteProfiles	Gnk2-homologous domain profile.	27	129	IPR002902	-
	Vium169g00001	650	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	32	646	-	-
	Vium169g00001	650	CDD	STKc_IRAK	338	603	-	-
	Vium169g00001	650	FunFam	Cysteine-rich receptor-like protein kinase 28	29	128	-	-
	Vium169g00001	650	ProSiteProfiles	Gnk2-homologous domain profile.	135	240	IPR002902	-
	Vium169g00001	650	SUPERFAMILY	Protein kinase-like (PK-like)	306	603	IPR011009	-
	Vium169g00001	650	FunFam	Cysteine-rich receptor-like protein kinase 10	295	407	-	-
	Vium169g00001	650	SMART	serkin_6	332	609	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium169g00001	650	FunFam	cysteine-rich receptor-like protein kinase 10	408	610	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium169g00001	Vium-Chr169	15070	18164	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium169g00001	8	650	Receptor kinase-like Gene Family	AT4G05200	39.701	3.89e-168	495

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vium169g00001		PK_Tyr_Ser-Thr	2.3e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium169g00001	-		-	gmx:100795922	861.292