Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1697g00001 ATGAAGACTTTAGGGTTGTCGCATGTTCTCCAAATTCTTACATGCATTCTGCTACTCACTCCCTCGTTTTCTAAAGATGATCGAAAGATTTACATAGTCTACATGGGCGAATATCCCAAGGGCGTGGAATTCACAGAGTCACTTCACACTAGTATGGTTCAAAGTGCCATCAGCAGAAAACTTGCACCAGATACTTTGGTACACAGCTACAAGAGTTTCAATGGATTTGTGGCGAGGCTAACCAAAGAAGAATCAGAAAGAATGAAAGAAATGGATGATGTGGTTTCTGTTATTCCAAATAGAGTCCACAGTGTCCAAACATCAAGGTCCTGGGACTTTCTTGGCTTCCCTGAAAATGTCCAAAGAACAAAGGTAGAAAGTAACACAATCGTTGGAGTACTCGACAGTGGAATTTGGCCTAATTCCTCAAGCTTCACCGACGAAGGCTTTGGTCCTCCACCACAGAAATGGAAAGGAACATGTCATAACTTCACTTGCAATAACAAAATCATTGGAGCAAAATATTTTCGTCTTGATGGTGTGTTCGCCCAAGAGGACATCATATCTCCAACTGATAACATTGGTCACGGGTCTCACTGTGCATCAACTGCTGCTGGAAACTCTGTTAGCAATGCAAATTTGTTTGGGCTTGGCTCAGGAACAGCAAGAGGAGGAGTTCCATCAGCACGCATTGCTGTGTATAAAATCTGTTGGACAAATGGTTGTGAAACTGCTGACATTCTTGCAGGATTTGATGCAGCCATTATGGATGGTGTTGACATTATATCTCTTTCAGTGGGATATGCAGGCGTCATACACGTGGAATATTTTCAAGATGTCTTTGCAATAGGAGCT 855 0.4234 MKTLGLSHVLQILTCILLLTPSFSKDDRKIYIVYMGEYPKGVEFTESLHTSMVQSAISRKLAPDTLVHSYKSFNGFVARLTKEESERMKEMDDVVSVIPNRVHSVQTSRSWDFLGFPENVQRTKVESNTIVGVLDSGIWPNSSSFTDEGFGPPPQKWKGTCHNFTCNNKIIGAKYFRLDGVFAQEDIISPTDNIGHGSHCASTAAGNSVSNANLFGLGSGTARGGVPSARIAVYKICWTNGCETADILAGFDAAIMDGVDIISLSVGYAGVIHVEYFQDVFAIGA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1697g00001 285 ProSiteProfiles Serine proteases, subtilase domain profile. 110 285 - -
Vium1697g00001 285 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 20 105 IPR037045 -
Vium1697g00001 285 ProSitePatterns Serine proteases, subtilase family, histidine active site. 196 206 IPR022398 -
Vium1697g00001 285 Gene3D Peptidase S8/S53 domain 129 284 IPR036852 GO:0004252|GO:0006508
Vium1697g00001 285 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 31 285 IPR045051 -
Vium1697g00001 285 Pfam Subtilase family 127 267 IPR000209 GO:0006508|GO:0008236
Vium1697g00001 285 Pfam Peptidase inhibitor I9 31 102 IPR010259 -
Vium1697g00001 285 SUPERFAMILY Subtilisin-like 113 280 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1697g00001 Vium-Chr1697 110 3191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1697g00001 27 285 Subtilisin-like Serine Gene Family AT5G59100 50.936 1.05e-83 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1697g00001 - - vum:124827580 580.482