Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1695g00001 ATGTGCGAAGCACTGAAGACGCAGTACCAGGTAAACGAGGAGATCGGTCGTGGACGCTTCACGACCATCTTCCGTTGTTTCCACCCTCTCTCCAACAAACCCTACGCTTGCAAGGTCATCGACAAGTCTCTTCTCGCCGATTCCACCGACCGTGAGTGTCTCCAGAACGAACCAAAATTCATGACCCTTCTCTCTCCTCATCCTAACATTCTTCAAATCTTCAATGTCTTCGAGGACGACGATTCTCTCTCCATCGTCATGGACCTCTGCCAGCCCCACACGCTCTTCGACCACATCGTTAACGACCCCATCTTCGAGATCAAGGCGATCGTTCTCATCAAGAGCCTTCTTGAAAGCCTGGCCCATTGCCATCGCATGGGCGTGGCCCACTATGACATCAAGCCCGACAATGTTCTCTTCGACTCCGCGGATAATCTCTTAGCCATAGTAGCATCGTCAAGAAAAAGGAGAGGAGGAGAGGCGCTAGGTTTTCCTGGCTTGAATGAGGCATTTGGGAAAATATTTCCTCTTTCGCTTGTTAGGAAGGCTTATATGCCTCAATCCATCTTGTCGACCGAGGCAATATCTTTGCCACCAGAAAGATACATGTGA 612 0.5 MCEALKTQYQVNEEIGRGRFTTIFRCFHPLSNKPYACKVIDKSLLADSTDRECLQNEPKFMTLLSPHPNILQIFNVFEDDDSLSIVMDLCQPHTLFDHIVNDPIFEIKAIVLIKSLLESLAHCHRMGVAHYDIKPDNVLFDSADNLLAIVASSRKRRGGEALGFPGLNEAFGKIFPLSLVRKAYMPQSILSTEAISLPPERYM 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1695g00001 203 FunFam Phosphoenolpyruvate carboxylase kinase 1 1 91 - -
Vium1695g00001 203 ProSiteProfiles Protein kinase domain profile. 9 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1695g00001 203 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Vium1695g00001 203 Gene3D Transferase(Phosphotransferase) domain 1 2 150 - -
Vium1695g00001 203 SMART serkin_6 9 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1695g00001 203 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 145 - -
Vium1695g00001 203 SUPERFAMILY Protein kinase-like (PK-like) 7 145 IPR011009 -
Vium1695g00001 203 Pfam Protein kinase domain 9 145 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1695g00001 Vium-Chr1695 504 1117 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1695g00001 9 197 EF-hand Containing Proteins AT5G19450 33.333 1.55e-28 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium1695g00001 Pkinase 3.9e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1695g00001 - K08794 vum:124827579 412.92