Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1693g00005 ATGAAGCCTGTAGAAAATGGTGAAACCGTTGACATAAACTATCAAAATAGCTGGTTAGGTTTCTCCCTCTCCCCGCAAATGAATATAACTGTTCCTTCACACTCTCATCAAACACACCCTTCATCTGCTGCTGCTGCTGAAACAGTTCCACCAACGTATTACCACCACACACCTCTTCATAACTATGGAATCCTAGGTGAACATGTTGGAATGTTTTCTTCCTTGCCTATCGTGCCCCTTAAATCCAATGTCTCGTTCTATGGAATAGAGGCTATCAGCAGGTCACAAGCACAAGAAATGGCAACTACTTCGGCAATACCTCTGAGCTTGGATAGTATGTTTTACAACCAACTCTCATGTCATGGATCGAACGATCCAAATAACCAAAACCATGTACAAGAGAACATCAGCAAGCAACAGCCACCATATTATTCTTCCTTAAGAAACAACCATGATGTGATTTTAGAAGGGTCTAAGCAGCAACTCCCTTGTATAGCTGAGGATGAAGTTGCTTGTCTGAAAAGTTGGTTCTCGAGGGACTTTCCTGCTTGTCAAGCGCAGGAGTCAAGGATGTTTGTTCCTTTGGAGGATAATGGAAGCAAATCTGGACCCAATATTGGATCAATAACATATGGGGATTTACATTCGTTGAATTTGTCTGTGAGCCCTACCAGACCATCAAGCCGTGTTACAGGTTCGCCTGCCATCAATGATACGAAGAAAAGGGGGCTTGAAATGGTGGACCAGAATCAGAAGAAAATAGTACATAGGAAATCCATAGACACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGTTGCAAGAAGGAGGGCCAAGGAAGGAAAGGAAGGCAAGTGTATCTGGGGGGTTATGATATGGAAGAAAAAGCTGCAAGAGCTTACGACATGGCCGCACTCAAGTATTGGGGACCCTCCTCTCATATAAATTTCCCTTTGGAAAATTATCAAAACGAACTTGAGGAAATGAAAAACATGACGAGACAAGAATATGTTGCTCATTTACGAAGGAAAAGCAGCGGATTCTCAAGAGGAGCATCCATGTATAGAGGAGTAACAAGGCACCACCAACATGGAAGGTGGCAAGCTCGAATTGGGAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGCACCCAAGAGGAAGCAGCAGAAGCCTATGATATTGCTGCCATTAAATTCAGAGGAGTTAATGCTGTTACTAACTTTGATATAACAAGATATGACGTGGAAAAAATTATGGCGAGCGACAACCTTCTCAGCAGTGAACAAGCCAAGAGGAGCAGAGAGAAGGAGGATGGAACAAGAAACGAGGCCTTCGTTAACCAAAATCCTTGTGCATATGAACACAATAAAGAAACCATTGTAATGCAGAAAAGCTGCAAGATGGTTCCTTATCCACCCCACCAACAGCTTGACCAGAATCCACCAAGAATCGAGAGTTGCAGAACTCATTCCTTCTCAACGGCTATAGATAACATATTTCATCAAGAAGTAGAGGAATCGAGTAACATGGGAACACACTTGTCAAATCCTTCTTCTCTGGTGACAAGTTTGAGTAGCTCAAGAGAAGAGAGCCCAGATAAGACAAGCTTGCCAATGCTCTTTGGAATGCCTTCAACAGTGTCTAAATTATTCACTAACATTCCAACAAGTGACGGAGATTCTTGGGAGCTATCGTCCAATCTCAGGCCAGCTCTTTCTTTGCCTCCGATGCCAATTTTTGCTTCCTGGACCGATGCCTAA 1821 0.4311 MKPVENGETVDINYQNSWLGFSLSPQMNITVPSHSHQTHPSSAAAAETVPPTYYHHTPLHNYGILGEHVGMFSSLPIVPLKSNVSFYGIEAISRSQAQEMATTSAIPLSLDSMFYNQLSCHGSNDPNNQNHVQENISKQQPPYYSSLRNNHDVILEGSKQQLPCIAEDEVACLKSWFSRDFPACQAQESRMFVPLEDNGSKSGPNIGSITYGDLHSLNLSVSPTRPSSRVTGSPAINDTKKRGLEMVDQNQKKIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQGRKGRQVYLGGYDMEEKAARAYDMAALKYWGPSSHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVEKIMASDNLLSSEQAKRSREKEDGTRNEAFVNQNPCAYEHNKETIVMQKSCKMVPYPPHQQLDQNPPRIESCRTHSFSTAIDNIFHQEVEESSNMGTHLSNPSSLVTSLSSSREESPDKTSLPMLFGMPSTVSKLFTNIPTSDGDSWELSSNLRPALSLPPMPIFASWTDA 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1693g00005 606 FunFam AP2-like ethylene-responsive transcription factor ANT 268 337 - -
Vium1693g00005 606 Gene3D AP2/ERF domain 268 337 IPR036955 GO:0003700|GO:0006355
Vium1693g00005 606 Gene3D AP2/ERF domain 371 431 IPR036955 GO:0003700|GO:0006355
Vium1693g00005 606 FunFam AP2-like ethylene-responsive transcription factor 370 431 - -
Vium1693g00005 606 ProSiteProfiles AP2/ERF domain profile. 269 335 IPR001471 GO:0003700|GO:0006355
Vium1693g00005 606 ProSiteProfiles AP2/ERF domain profile. 371 429 IPR001471 GO:0003700|GO:0006355
Vium1693g00005 606 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 233 505 - -
Vium1693g00005 606 MobiDBLite consensus disorder prediction 527 553 - -
Vium1693g00005 606 CDD AP2 268 335 IPR001471 GO:0003700|GO:0006355
Vium1693g00005 606 Pfam AP2 domain 269 327 IPR001471 GO:0003700|GO:0006355
Vium1693g00005 606 Pfam AP2 domain 372 421 IPR001471 GO:0003700|GO:0006355
Vium1693g00005 606 Coils Coil 336 356 - -
Vium1693g00005 606 SMART rav1_2 269 341 IPR001471 GO:0003700|GO:0006355
Vium1693g00005 606 SMART rav1_2 371 435 IPR001471 GO:0003700|GO:0006355
Vium1693g00005 606 SUPERFAMILY DNA-binding domain 370 430 IPR016177 GO:0003677
Vium1693g00005 606 SUPERFAMILY DNA-binding domain 268 337 IPR016177 GO:0003677
Vium1693g00005 606 PRINTS Ethylene responsive element binding protein signature 411 431 IPR001471 GO:0003700|GO:0006355
Vium1693g00005 606 PRINTS Ethylene responsive element binding protein signature 270 281 IPR001471 GO:0003700|GO:0006355
Vium1693g00005 606 CDD AP2 370 431 IPR001471 GO:0003700|GO:0006355
Vium1693g00005 606 MobiDBLite consensus disorder prediction 527 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1693g00005 Vium-Chr1693 15749 19530 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1693g00005 49 606 AP2-EREBP Transcription Factor Family AT4G37750 43.042 1.49e-139 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vium1693g00005 AP2 5.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1693g00005 K09285 - gmx:100794433 937.947