Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1693g00004 ATGAAGCCTGTAGAAAATGGTGAAACCGTTGACATAAACTATCAAAATAGCTGGTTAGGTTTCTCCCTCTCCCCGCAAATGAATATAACTGCTGCTGCTGCTGCTGAAACAGTTCCACCAACGTATTACCACCACACACCTCTTCATAACTATGGAATCCTAGGTGAACATGTTGGAATGTTTTCTTCCTTGCCTATCGTGCCCCTTAAATCCAATGTCTCGTTCTATGGAATAGAGGCTATCAGCAGGTCACAAGCACAAGAAATGGCAACTACTTCGGCAATACCTCTGAGCTTGGATAGTATGTTTTACAACCAACTCTCATGTCATGGATCGAACGATCCAAATAACCAAAACCATGTACAAGAGAACATCAGCAAGCAACAGCCACCATATTATTCTTCCTTAAGAAACAACCATGATGTGATTTTAGAAGGGTCTAAGCAGCAACTCCCTTGTATAGCTGAGGATGAAGTTGCTTGTCTGAAAAGTTGGTTCTCGAGGGACTTTCCTGCTTGTCAAGCGCAGGAGTCAAGGATGTTTGTTCCTTTGGAGGATAATGGAAGCAAATCTGGACCCAATATTGGATCAATAACATATGGGGATTTACATTCGTTGAATTTGTCTGTGAGCCCTACCAGACCATCAAGCCGTGTTACAGGTTCGCCTGCCATCAATGATACGAAGAAAAGGGGGCTTGAAATGGTGGACCAGAATCAGAAGAAAATAGTACATAGGAAATCCATAGACACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGTTGCAAGAAGGAGGGCCAAGGAAGGAAAGGAAGGCAAGTGTATCTGGGGGGTTATGATATGGAAGAAAAAGCTGCAAGAGCTTACGACATGGCCGCACTCAAGTATTGGGGACCCTCCTCTCATATAAATTTCCCTTTGGAAAATTATCAAAACGAACTTGAGGAAATGAAAAACATGACGAGACAAGAATATGTTGCTCATTTACGAAGGAAAAGCAGCGGATTCTCAAGAGGAGCATCCATGTATAGAGGAGTAACAAGGTCTCACAGGCTAGCATTTACATTGCACCACCAACATGGAAGGTGGCAAGCTCGAATTGGGAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGCACCCAAGAGGAAGCAGCAGAAGCCTATGATATTGCTGCCATTAAATTCAGAGGAGTTAATGCTGTTACTAACTTTGATATAACAAGATATGACGTGGAAAAAATTATGGCGAGCGACAACCTTCTCAGCAGTGAACAAGCCAAGAGGAGCAGAGAGAAGGAGGATGGAACAAGAAACGAGGCCTTCGTTAACCAAAATCCTTGTGCATATGAACACAATAAAGAAACCATTGTAATGCAGAAAAGCTGCAAGATGGTTCCTTATCCACCCCACCAACAGCTTGACCAGAATCCACCAAGAATCGAGAGTTGCAGAACTCATTCCTTCTCAACGGCTATAGATAACATATTTCATCAAGAAGTAGAGGAATCGAGTAACATGGGAACACACTTGTCAAATCCTTCTTCTCTGGTGACAAGTTTGAGTAGCTCAAGAGAAGAGAGCCCAGATAAGACAAGCTTGCCAATGCTCTTTGGAATGCCTTCAACAGTGTCTAAATTATTCACTAACATTCCAACAAGTGACGGAGATTCTTGGGAGCTATCGTCCAATCTCAGGCCAGCTCTTTCTTTGCCTCCGATGCCAATTTTTGCTTCCTGGACCGATGCCTAA 1812 0.431 MKPVENGETVDINYQNSWLGFSLSPQMNITAAAAAETVPPTYYHHTPLHNYGILGEHVGMFSSLPIVPLKSNVSFYGIEAISRSQAQEMATTSAIPLSLDSMFYNQLSCHGSNDPNNQNHVQENISKQQPPYYSSLRNNHDVILEGSKQQLPCIAEDEVACLKSWFSRDFPACQAQESRMFVPLEDNGSKSGPNIGSITYGDLHSLNLSVSPTRPSSRVTGSPAINDTKKRGLEMVDQNQKKIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQGRKGRQVYLGGYDMEEKAARAYDMAALKYWGPSSHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRSHRLAFTLHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVEKIMASDNLLSSEQAKRSREKEDGTRNEAFVNQNPCAYEHNKETIVMQKSCKMVPYPPHQQLDQNPPRIESCRTHSFSTAIDNIFHQEVEESSNMGTHLSNPSSLVTSLSSSREESPDKTSLPMLFGMPSTVSKLFTNIPTSDGDSWELSSNLRPALSLPPMPIFASWTDA 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1693g00004 603 SUPERFAMILY DNA-binding domain 375 427 IPR016177 GO:0003677
Vium1693g00004 603 FunFam AP2-like ethylene-responsive transcription factor ANT 257 326 - -
Vium1693g00004 603 ProSiteProfiles AP2/ERF domain profile. 360 426 IPR001471 GO:0003700|GO:0006355
Vium1693g00004 603 MobiDBLite consensus disorder prediction 525 550 - -
Vium1693g00004 603 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 222 502 - -
Vium1693g00004 603 PRINTS Ethylene responsive element binding protein signature 306 326 IPR001471 GO:0003700|GO:0006355
Vium1693g00004 603 PRINTS Ethylene responsive element binding protein signature 259 270 IPR001471 GO:0003700|GO:0006355
Vium1693g00004 603 Gene3D AP2/ERF domain 360 428 IPR036955 GO:0003700|GO:0006355
Vium1693g00004 603 Gene3D AP2/ERF domain 257 326 IPR036955 GO:0003700|GO:0006355
Vium1693g00004 603 Pfam AP2 domain 258 316 IPR001471 GO:0003700|GO:0006355
Vium1693g00004 603 ProSiteProfiles AP2/ERF domain profile. 258 324 IPR001471 GO:0003700|GO:0006355
Vium1693g00004 603 CDD AP2 257 324 IPR001471 GO:0003700|GO:0006355
Vium1693g00004 603 SUPERFAMILY DNA-binding domain 257 326 IPR016177 GO:0003677
Vium1693g00004 603 Coils Coil 325 345 - -
Vium1693g00004 603 CDD AP2 359 428 IPR001471 GO:0003700|GO:0006355
Vium1693g00004 603 MobiDBLite consensus disorder prediction 525 556 - -
Vium1693g00004 603 SMART rav1_2 258 330 IPR001471 GO:0003700|GO:0006355
Vium1693g00004 603 SMART rav1_2 360 432 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1693g00004 Vium-Chr1693 15743 19530 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1693g00004 11 603 AP2-EREBP Transcription Factor Family AT4G37750 41.133 2.46e-137 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vium1693g00004 AP2 6.1e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1693g00004 K09285 - gmx:100794433 935.636