LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1693g00001	ATGAAGCCTGTAGAAAATGGTGAAACCGTTGACATAAACTATCAAAATAGCTGGTTAGGTTTCTCCCTCTCCCCGCAAATGAATATAACTGTTCCTTCACACTCTCATCAAACACACCCTTCATCTGCTGCTGCTGCTGAAACAGTTCCACCAACGTATTACCACCACACACCTCTTCATAACTATGGAATCCTAGGTGAACATGTTGGAATGTTTTCTTCCTTGCCTATCGTGCCCCTTAAATCCAATGTCTCGTTCTATGGAATAGAGGCTATCAGCAGGTCACAAGCACAAGAAATGGCAACTACTTCGGCAATACCTCTGAGCTTGGATAGTATGTTTTACAACCAACTCTCATGTCATGGATCGAACGATCCAAATAACCAAAACCATGTACAAGAGAACATCAGCAAGCAACAGCCACCATATTATTCTTCCTTAAGAAACAACCATGATGTGATTTTAGAAGGGTCTAAGCAGCAACTCCCTTGTATAGCTGAGGATGAAGTTGCTTGTCTGAAAAGTTGGTTCTCGAGGGACTTTCCTGCTTGTCAAGCGCAGGAGTCAAGGATGTTTGTTCCTTTGGAGGATAATGGAAGCAAATCTGGACCCAATATTGGATCAATAACATATGGGGATTTACATTCGTTGAATTTGTCTGTGAGCCCTACCAGACCATCAAGCCGTGTTACAGGTTCGCCTGCCATCAATGATACGAAGAAAAGGGGGCTTGAAATGGTGGACCAGAATCAGAAGAAAATAGTACATAGGAAATCCATAGACACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGTTGCAAGAAGGAGGGCCAAGGAAGGAAAGGAAGGCAAGTGTATCTGGGGGGTTATGATATGGAAGAAAAAGCTGCAAGAGCTTACGACATGGCCGCACTCAAGTATTGGGGACCCTCCTCTCATATAAATTTCCCTTTGGAAAATTATCAAAACGAACTTGAGGAAATGAAAAACATGACGAGACAAGAATATGTTGCTCATTTACGAAGGAAAAGCAGCGGATTCTCAAGAGGAGCATCCATGTATAGAGGAGTAACAAGGCACCACCAACATGGAAGGTGGCAAGCTCGAATTGGGAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAATAGAGGACTTATCAGTGCAGTAGCAGTGAATTACCTCAAAGGCAACAATGGTGAGAAAAAGGCACGAAGATACGCTTCCCATCGCCCCACACGAAAAGGATGGTGA	1314	0.4338	MKPVENGETVDINYQNSWLGFSLSPQMNITVPSHSHQTHPSSAAAAETVPPTYYHHTPLHNYGILGEHVGMFSSLPIVPLKSNVSFYGIEAISRSQAQEMATTSAIPLSLDSMFYNQLSCHGSNDPNNQNHVQENISKQQPPYYSSLRNNHDVILEGSKQQLPCIAEDEVACLKSWFSRDFPACQAQESRMFVPLEDNGSKSGPNIGSITYGDLHSLNLSVSPTRPSSRVTGSPAINDTKKRGLEMVDQNQKKIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQGRKGRQVYLGGYDMEEKAARAYDMAALKYWGPSSHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFNRGLISAVAVNYLKGNNGEKKARRYASHRPTRKGW	437

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1693g00001	437	CDD	AP2	268	335	IPR001471	GO:0003700\|GO:0006355
	Vium1693g00001	437	ProSiteProfiles	AP2/ERF domain profile.	371	432	IPR001471	GO:0003700\|GO:0006355
	Vium1693g00001	437	SUPERFAMILY	DNA-binding domain	268	337	IPR016177	GO:0003677
	Vium1693g00001	437	Coils	Coil	336	356	-	-
	Vium1693g00001	437	FunFam	AP2-like ethylene-responsive transcription factor ANT	268	337	-	-
	Vium1693g00001	437	ProSiteProfiles	AP2/ERF domain profile.	269	335	IPR001471	GO:0003700\|GO:0006355
	Vium1693g00001	437	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	238	403	-	-
	Vium1693g00001	437	SUPERFAMILY	DNA-binding domain	370	409	IPR016177	GO:0003677
	Vium1693g00001	437	Gene3D	AP2/ERF domain	268	337	IPR036955	GO:0003700\|GO:0006355
	Vium1693g00001	437	Gene3D	AP2/ERF domain	371	414	IPR036955	GO:0003700\|GO:0006355
	Vium1693g00001	437	PRINTS	Ethylene responsive element binding protein signature	270	281	IPR001471	GO:0003700\|GO:0006355
	Vium1693g00001	437	PRINTS	Ethylene responsive element binding protein signature	317	337	IPR001471	GO:0003700\|GO:0006355
	Vium1693g00001	437	SMART	rav1_2	269	341	IPR001471	GO:0003700\|GO:0006355
	Vium1693g00001	437	SMART	rav1_2	371	435	IPR001471	GO:0003700\|GO:0006355
	Vium1693g00001	437	Pfam	AP2 domain	269	327	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1693g00001	Vium-Chr1693	6206	11408	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1693g00001	49	402	AP2-EREBP Transcription Factor Family	AT4G37750	47.689	1.50e-105	322

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Vium1693g00001		AP2	3.3e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1693g00001	K09285		-	gmx:100794433	663.299