Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1693g00001 ATGAAGCCTGTAGAAAATGGTGAAACCGTTGACATAAACTATCAAAATAGCTGGTTAGGTTTCTCCCTCTCCCCGCAAATGAATATAACTGTTCCTTCACACTCTCATCAAACACACCCTTCATCTGCTGCTGCTGCTGAAACAGTTCCACCAACGTATTACCACCACACACCTCTTCATAACTATGGAATCCTAGGTGAACATGTTGGAATGTTTTCTTCCTTGCCTATCGTGCCCCTTAAATCCAATGTCTCGTTCTATGGAATAGAGGCTATCAGCAGGTCACAAGCACAAGAAATGGCAACTACTTCGGCAATACCTCTGAGCTTGGATAGTATGTTTTACAACCAACTCTCATGTCATGGATCGAACGATCCAAATAACCAAAACCATGTACAAGAGAACATCAGCAAGCAACAGCCACCATATTATTCTTCCTTAAGAAACAACCATGATGTGATTTTAGAAGGGTCTAAGCAGCAACTCCCTTGTATAGCTGAGGATGAAGTTGCTTGTCTGAAAAGTTGGTTCTCGAGGGACTTTCCTGCTTGTCAAGCGCAGGAGTCAAGGATGTTTGTTCCTTTGGAGGATAATGGAAGCAAATCTGGACCCAATATTGGATCAATAACATATGGGGATTTACATTCGTTGAATTTGTCTGTGAGCCCTACCAGACCATCAAGCCGTGTTACAGGTTCGCCTGCCATCAATGATACGAAGAAAAGGGGGCTTGAAATGGTGGACCAGAATCAGAAGAAAATAGTACATAGGAAATCCATAGACACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGTTGCAAGAAGGAGGGCCAAGGAAGGAAAGGAAGGCAAGTGTATCTGGGGGGTTATGATATGGAAGAAAAAGCTGCAAGAGCTTACGACATGGCCGCACTCAAGTATTGGGGACCCTCCTCTCATATAAATTTCCCTTTGGAAAATTATCAAAACGAACTTGAGGAAATGAAAAACATGACGAGACAAGAATATGTTGCTCATTTACGAAGGAAAAGCAGCGGATTCTCAAGAGGAGCATCCATGTATAGAGGAGTAACAAGGCACCACCAACATGGAAGGTGGCAAGCTCGAATTGGGAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAATAGAGGACTTATCAGTGCAGTAGCAGTGAATTACCTCAAAGGCAACAATGGTGAGAAAAAGGCACGAAGATACGCTTCCCATCGCCCCACACGAAAAGGATGGTGA 1314 0.4338 MKPVENGETVDINYQNSWLGFSLSPQMNITVPSHSHQTHPSSAAAAETVPPTYYHHTPLHNYGILGEHVGMFSSLPIVPLKSNVSFYGIEAISRSQAQEMATTSAIPLSLDSMFYNQLSCHGSNDPNNQNHVQENISKQQPPYYSSLRNNHDVILEGSKQQLPCIAEDEVACLKSWFSRDFPACQAQESRMFVPLEDNGSKSGPNIGSITYGDLHSLNLSVSPTRPSSRVTGSPAINDTKKRGLEMVDQNQKKIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQGRKGRQVYLGGYDMEEKAARAYDMAALKYWGPSSHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFNRGLISAVAVNYLKGNNGEKKARRYASHRPTRKGW 437
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium1693g00001 437 CDD AP2 268 335 IPR001471 GO:0003700|GO:0006355
Vium1693g00001 437 ProSiteProfiles AP2/ERF domain profile. 371 432 IPR001471 GO:0003700|GO:0006355
Vium1693g00001 437 SUPERFAMILY DNA-binding domain 268 337 IPR016177 GO:0003677
Vium1693g00001 437 Coils Coil 336 356 - -
Vium1693g00001 437 FunFam AP2-like ethylene-responsive transcription factor ANT 268 337 - -
Vium1693g00001 437 ProSiteProfiles AP2/ERF domain profile. 269 335 IPR001471 GO:0003700|GO:0006355
Vium1693g00001 437 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 238 403 - -
Vium1693g00001 437 SUPERFAMILY DNA-binding domain 370 409 IPR016177 GO:0003677
Vium1693g00001 437 Gene3D AP2/ERF domain 268 337 IPR036955 GO:0003700|GO:0006355
Vium1693g00001 437 Gene3D AP2/ERF domain 371 414 IPR036955 GO:0003700|GO:0006355
Vium1693g00001 437 PRINTS Ethylene responsive element binding protein signature 270 281 IPR001471 GO:0003700|GO:0006355
Vium1693g00001 437 PRINTS Ethylene responsive element binding protein signature 317 337 IPR001471 GO:0003700|GO:0006355
Vium1693g00001 437 SMART rav1_2 269 341 IPR001471 GO:0003700|GO:0006355
Vium1693g00001 437 SMART rav1_2 371 435 IPR001471 GO:0003700|GO:0006355
Vium1693g00001 437 Pfam AP2 domain 269 327 IPR001471 GO:0003700|GO:0006355
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium1693g00001 Vium-Chr1693 6206 11408 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1693g00001 49 402 AP2-EREBP Transcription Factor Family AT4G37750 47.689 1.50e-105 322
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium1693g00001 AP2 3.3e-13 CL0081
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1693g00001 K09285 - gmx:100794433 663.299