Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1692g00010 ATGGCCAGCAGCAAGTGTTGCATGATCTCTTCACAACAAAACCAGAATGCCCCCACATGTTACCCTTTTCCATCTTCTCCTTCAATGGGAATGGTCTGTGCAGACATGATGGGGTCTCTCTCTCTTGCTACTGTTTCAAATGCTCTTTCATCTCAAGAAAGCTTTGGTTATGGCCATCATCATGGTCATGCTTCTGGGGTGGAAAATGGAAGGAGCACAAGCTGGAGTTTTCCCTTCATGAGGGAGTTCCTCTCCTCAAACTTTGAAGACTGTAGTGATGTTGGGGCTGGGGAGAGTAACAGTAATGAGAAAACAAACAACAATGGCAAGTTTAGTGAAGAAAGTAACCCTAACGAGAACCTTCTCAGTGGCAAAGAGGTAGATAGTGGACACTCTAAACTTTGTGCAAGAGGGCATTGGAGGCCTGCAGAAGATTCCAAGCTCAAGGAGCTCGTGGCTCTTTATGGCCCTCAGAATTGGAACCTCATAGCTGAAAAGCTAGAAGGAAGATCAGGGAAGAGCTGTAGGCTGAGGTGGTTCAACCAGTTAGATCCAAGGATCAATAGAAGAGCTTTCAGTGAAGAGGAGGAAGAGAGGCTAATGCAGGCACATAGAATTTATGGCAACAAATGGGCCATGATTGCTAGGCTTTTCCCTGGGAGAACAGATAATGCAGTGAAGAATCACTGGCATGTTATAATGGCCAGGAAGTACAGGGAACAGTCCAGTGCCTACAGGAGGAGGAGAATGAGCCAATCTGTTTACAAAAGGGTGGAGCAAAATCCAATCTTTTGCAGCAGGGACAATGCCTCAACCACGGAACAAGAACCATCGCCTTCTTATTGTCTCAATCTCCTCCACAACGGAGTAGGAGTCACAAATAACCTGGCTAGTTTCCCATCCTTCCATGGAGTAGGTTCTGGTGAGGTTGTTGATTTTGGCTTAAATGCTTCTCTACAAAACATGAATGGTGTGAGAGAAGCAATGTCAAACACCCTACAAGTTGGCCTGCGTGCTCAAGCTCAACAAGCACCATTTGATTTCTTCTCCGGTGGTGGAAGCAATGACATGACGGGAGAGTCTAACGGGCAGATCAGAAGCTGGGAGAGGAGCAATGAATCTGTTCAATCTGGTTTATACCCTCATTATCCCCAACAATATTTGAGGGCAATGCAACAGCTAGAGAACAACACACGCAACAATTTTTACAGTTTCTTGAATTCCTCATCGGCATCAGCAAGCACAGGGAAGGAAGCATCATCATCATCAGCATGTGTTGCAGGAATGAGAGATAAAGTGGTGAATAGTGACCCCCCAGATGGTGTTCCACCCCCATTTTTTGACTTCCTTGGAGTAGGAGCCACATGA 1368 0.4598 MASSKCCMISSQQNQNAPTCYPFPSSPSMGMVCADMMGSLSLATVSNALSSQESFGYGHHHGHASGVENGRSTSWSFPFMREFLSSNFEDCSDVGAGESNSNEKTNNNGKFSEESNPNENLLSGKEVDSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRMSQSVYKRVEQNPIFCSRDNASTTEQEPSPSYCLNLLHNGVGVTNNLASFPSFHGVGSGEVVDFGLNASLQNMNGVREAMSNTLQVGLRAQAQQAPFDFFSGGGSNDMTGESNGQIRSWERSNESVQSGLYPHYPQQYLRAMQQLENNTRNNFYSFLNSSSASASTGKEASSSSACVAGMRDKVVNSDPPDGVPPPFFDFLGVGAT 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1692g00010 455 PANTHER MYB PROTEIN-RELATED 137 281 - -
Vium1692g00010 455 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 184 238 IPR017930 -
Vium1692g00010 455 Pfam Myb-like DNA-binding domain 189 232 IPR001005 -
Vium1692g00010 455 Pfam Myb-like DNA-binding domain 137 183 IPR001005 -
Vium1692g00010 455 Gene3D - 137 188 - -
Vium1692g00010 455 ProSiteProfiles Myb-like domain profile. 137 183 IPR001005 -
Vium1692g00010 455 FunFam MYB transcription factor 190 260 - -
Vium1692g00010 455 MobiDBLite consensus disorder prediction 94 125 - -
Vium1692g00010 455 CDD SANT 140 181 IPR001005 -
Vium1692g00010 455 FunFam MYB transcription factor 137 188 - -
Vium1692g00010 455 SMART sant 188 236 IPR001005 -
Vium1692g00010 455 SMART sant 136 185 IPR001005 -
Vium1692g00010 455 CDD SANT 191 231 IPR001005 -
Vium1692g00010 455 ProSiteProfiles Myb-like domain profile. 184 234 IPR001005 -
Vium1692g00010 455 MobiDBLite consensus disorder prediction 94 127 - -
Vium1692g00010 455 SUPERFAMILY Homeodomain-like 137 230 IPR009057 -
Vium1692g00010 455 Gene3D - 190 261 - -
Vium1692g00010 455 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 183 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1692g00010 Vium-Chr1692 157013 159602 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1692g00010 130 262 MYB Transcription Factor Family AT1G69560 81.481 7.85e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium1692g00010 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1692g00010 K09422 - gmx:100776292 672.93