Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1692g00008 ATGTCAACTTCTTGGAAAATGGCTCAATTTGGTTTGCTGGTCTTGGTGGGGCTTCTTCTCACAATGTTCTCCTCTGCCTATGGCTATGGCTATGGTGGAGGCTGGGTTAATGCGCACGCTACCTTCTATGGAGGGAGTGATGCATCTGGAACAATGGGTGGGGCTTGTGGGTATGGGAACCTCTACAGCCAGGGTTATGGAACAAACACTGCTGCTTTAAGCACTGCTTTGTTCAACAATGGTCTGAGCTGTGGTTCATGCTATGAGATAAGGTGTGTGAGTGACCACAGATGGTGCCTTCCCGGTTCCATTTTGGTCACTGCCACCAATTTCTGCCCTCCAAATAATGCCTTACCCAACAATGCAGGAGGGTGGTGCAACCCTCCCCTGCACCATTTTGACCTCTCTCAACCTGTTTTTCTGCGCATTGCACAATACAAAGCAGGAATCGTGCCTGTGTCCTATAGAAGGGTGGCCTGCAGAAGAAGGGGTGGCATAAGGTTCACAATCAATGGTCACTCCTACTTCAACCTGGTCCTGATAACAAACGTAGGAGGTGCTGGGGATGTGCATGGTGTGGCCATAAAAGGTTCAAGAACTGGGTGGATGCCAATGTCCAGGAACTGGGGTCAGAACTGGCAGAGCAACAACTATCTCAATGGCCAAAGCCTCTCCTTTAAGGTCACAGCTAGTGATGGCCAGACAGTGGTGTCCTACAACGTTGCCCCTGCTGGGTGGTCCTTTGGACAAACATACACTGGTGCTCAATTCCGCTAG 777 0.5032 MSTSWKMAQFGLLVLVGLLLTMFSSAYGYGYGGGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCVSDHRWCLPGSILVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFLRIAQYKAGIVPVSYRRVACRRRGGIRFTINGHSYFNLVLITNVGGAGDVHGVAIKGSRTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTASDGQTVVSYNVAPAGWSFGQTYTGAQFR 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1692g00008 258 Gene3D - 165 257 IPR036749 -
Vium1692g00008 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Vium1692g00008 258 SMART dpbb_1 70 155 IPR007112 -
Vium1692g00008 258 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Vium1692g00008 258 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Vium1692g00008 258 PRINTS Expansin signature 92 103 IPR002963 GO:0009664
Vium1692g00008 258 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Vium1692g00008 258 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Vium1692g00008 258 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Vium1692g00008 258 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Vium1692g00008 258 PRINTS Expansin signature 65 79 IPR002963 GO:0009664
Vium1692g00008 258 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Vium1692g00008 258 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Vium1692g00008 258 SUPERFAMILY Barwin-like endoglucanases 34 183 IPR036908 -
Vium1692g00008 258 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Vium1692g00008 258 Gene3D - 24 161 IPR036908 -
Vium1692g00008 258 Pfam Lytic transglycolase 70 155 IPR009009 -
Vium1692g00008 258 FunFam Expansin 165 257 - -
Vium1692g00008 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 165 IPR007112 -
Vium1692g00008 258 PANTHER EXPANSIN-A15 18 257 IPR002963 GO:0009664
Vium1692g00008 258 CDD DPBB_EXPA_N 35 160 - -
Vium1692g00008 258 FunFam Expansin 24 161 - -
Vium1692g00008 258 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576
Vium1692g00008 258 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Vium1692g00008 258 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Vium1692g00008 258 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Vium1692g00008 258 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Vium1692g00008 258 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1692g00008 Vium-Chr1692 103697 105698 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1692g00008 10 258 Expansin Gene Family AT2G03090 82.072 6.17e-153 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1692g00008 - - gmx:100796316 494.967