Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1690g00003 ATGGATCGTGGGGACCAAATGGCGTTATCCGGGTCTTACTATATGCAGCAAAGGGGAATTCCTGGATCTGGAGCACAACCCGAGTTGCATATGTCACCTAATATTCGACCACTCTCCAATCCGAATCTACCATTTCAATCCAGCATTGGTGGTGGTTCCATTGGATCCACATTGCCATTAGAGTCTTCTTCAATTTCAGCTCATGGAGTCAATATGGGAGCTCCTCCCGGGGCACCTCCAGGGGAGCCTGTTAAAAGGAAGAGAGGAAGGCCTAGGAAATATGGCACTGATGGAACTGTGTCATTGGCATTGACTCCAACTCCAACATCATCTGGTCACCCTGGATCCTTGGGACAGAGCCAGAAACGTGGCAGAGGCCGACCACCTGGTACTGGGAAAAAACAGCAGTTGGCTTCTCTTGGTGAATTGATGTCTGGTTCAGCTGGGATGGGATTCACTCCTCATATCATCAACATTGCAAGTGGAGAAGACATTGCAACAAAAATCATGGCATTTTCTCAGCAGGGACCTAGAGCTGTTTGTATTTTGTCAGCCAATGGCGCTGTGTCAACTGTCACACTTCGACAGCCATCAACTTCAGGCGGCACTGTCACATACGAGGGGCGCTTCGAGATAGTGTGCCTTTCAGGCTCTTACTTAGTCACTGATAGTGGTGGCTCACGCAATCGAACTGGTGGACTGAGTGTGTCCCTTGCTAGTCCTGATGGTCGTGTCATCGGTGGAGGAGTTGGTGGAGTTCTTATTGCATCAAGTCCTGTTCAGGTGGTAGTTGGGAGTTTTCAATGGGGTGGATCAAAGACAAAGAACAAGAAGAAGGAAAGCGCGGAAGTTGCAGAAGTTGCTATGGAGTCAGATCATCAGGGAGTTCATAATCCAGTGGCACTGAACAGCATCTCACCAAATCAAAATCTTTCTCCAAACCCTTCATCTTTGAGTCCTTGGTCTCAATCGCGACCGTTGGATATGCGTAATTCCCATGTGGACATTGACTTGATGCGTGGGTGA 1026 0.4864 MDRGDQMALSGSYYMQQRGIPGSGAQPELHMSPNIRPLSNPNLPFQSSIGGGSIGSTLPLESSSISAHGVNMGAPPGAPPGEPVKRKRGRPRKYGTDGTVSLALTPTPTSSGHPGSLGQSQKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIINIASGEDIATKIMAFSQQGPRAVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVTDSGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIASSPVQVVVGSFQWGGSKTKNKKKESAEVAEVAMESDHQGVHNPVALNSISPNQNLSPNPSSLSPWSQSRPLDMRNSHVDIDLMRG 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1690g00003 341 MobiDBLite consensus disorder prediction 100 118 - -
Vium1690g00003 341 CDD DUF296 153 267 IPR005175 -
Vium1690g00003 341 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Vium1690g00003 341 SMART AT_hook_2 85 97 IPR017956 GO:0003677
Vium1690g00003 341 FunFam AT-hook motif nuclear-localized protein 1-like 154 285 - -
Vium1690g00003 341 MobiDBLite consensus disorder prediction 297 329 - -
Vium1690g00003 341 MobiDBLite consensus disorder prediction 33 69 - -
Vium1690g00003 341 MobiDBLite consensus disorder prediction 290 341 - -
Vium1690g00003 341 ProSiteProfiles PPC domain profile profile. 148 290 IPR005175 -
Vium1690g00003 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 268 IPR005175 -
Vium1690g00003 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 66 322 IPR039605 GO:0003680
Vium1690g00003 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 269 - -
Vium1690g00003 341 Gene3D - 154 295 - -
Vium1690g00003 341 MobiDBLite consensus disorder prediction 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1690g00003 Vium-Chr1690 28243 34284 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1690g00003 1 341 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 49.030 3.23e-84 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1690g00003 - - gmx:100814615 554.673