Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium168g00003 ATGTACGATCCCATGAACCAGATCGTTCCCGCCGAAGACAACGACGCCTCCGACCAACACATCCATTACAGCTCCCACAGTATAGAAGACGTTGGCGCCATCGTCGAACACGTTTCCTCCGACTCCCTTTACGTTCCACCCCCTGAAATCTCTATCCACGATTCTAGCCAGCTCACGCTCTCGTTTCGGGGCCAAGTCTATGTCTTCGATGCCGTCACACCTGATAAGGTCCAAGCAGTTTTATTGCTCTTAGGGGGAAGTGAACTGACTTCGGGCTCGCAATGTGCGGAGGAACTATCCCCTCAAAATCATGCGGGTGCAGCAGAATTTCCTGCAAGATGCAGTCTACCACAGCGAGTAGCATCGTTGAATAGGTTCCGTCAGAAGAGGAAAGAGCGGTGCTTTGATAAGAAAGTTAGATATAGTGTACGTCAAGAAGTTGCACTCAGGATGCATCGTAACAAGGGTCAATTTACTTCATCTAAGAAACAAGATGGAGCTAATAGTTGGGGTTCAGACCAAGAGTCAGGACAGGAGGCTGTTCAATCTGAAACCTCTTGTACGCATTGTGGAACAAGTTCAAAATCCACTCCAATGATGCGAAGGGGGCCCTCTGGTCCAAGGTCACTTTGCAATGCTTGCGGGCTTTTTTGGGCAAACAGGGGCACTTTGAGGGATCTTTCTAAGAGAAACCAAGAACTCTCTCTTGTGCCACTTGAGCAGGTTGGTGTGGGTGATAATAATGACTTGGACTGTGGGAGCATTATCCCTGCACAACATGACAATCATGTTAATGATAACAAAGCTTTGGTATCTGATCGTTGA 825 0.48 MYDPMNQIVPAEDNDASDQHIHYSSHSIEDVGAIVEHVSSDSLYVPPPEISIHDSSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGSELTSGSQCAEELSPQNHAGAAEFPARCSLPQRVASLNRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANSWGSDQESGQEAVQSETSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQELSLVPLEQVGVGDNNDLDCGSIIPAQHDNHVNDNKALVSDR 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium168g00003 274 ProSitePatterns GATA-type zinc finger domain. 187 214 IPR000679 GO:0006355|GO:0043565
Vium168g00003 274 MobiDBLite consensus disorder prediction 152 204 - -
Vium168g00003 274 ProSiteProfiles GATA-type zinc finger domain profile. 181 240 IPR000679 GO:0006355|GO:0043565
Vium168g00003 274 SMART GATA_3 181 234 IPR000679 GO:0006355|GO:0043565
Vium168g00003 274 SMART tify_2 51 86 IPR010399 -
Vium168g00003 274 Pfam GATA zinc finger 187 223 IPR000679 GO:0006355|GO:0043565
Vium168g00003 274 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 181 233 - -
Vium168g00003 274 MobiDBLite consensus disorder prediction 160 200 - -
Vium168g00003 274 Gene3D - 178 235 IPR013088 GO:0006355|GO:0008270
Vium168g00003 274 PANTHER GATA TRANSCRIPTION FACTOR 28 24 240 IPR045280 GO:0006355
Vium168g00003 274 Pfam tify domain 55 85 IPR010399 -
Vium168g00003 274 CDD ZnF_GATA 186 232 IPR000679 GO:0006355|GO:0043565
Vium168g00003 274 ProSiteProfiles Tify domain profile. 51 86 IPR010399 -
Vium168g00003 274 Pfam CCT motif 119 161 IPR010402 GO:0005515
Vium168g00003 274 ProSiteProfiles CCT domain profile. 119 161 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium168g00003 Vium-Chr168 35898 39889 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium168g00003 28 273 Tify Gene Family AT4G24470 59.036 4.59e-91 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium168g00003 CCT 6.9e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium168g00003 - - pvu:PHAVU_009G035400g 501.901