Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium168g00002 ATGGCGTCACTCAATCCGCAGCCTCTGCAGTTCCAGCACCCTGCGATACCCGTCGGCGACGACGGTGACAGTGACGCCGCTGATGATGATGCTATGGATGAGTTGGAGGATGCGCATGTTACTTCACTGAACGTCGTTGCTAATGCTGCCAGTGCCTACCAAGAACCGCTGCCTGCTATGCCTTCCAGAACTAGCGAGCTCACTCTTTCTTTCGAGGGTGAGGTTTATGTCTTTCCCGCAGTCACTCCTCAGAAGGTTCAAGCCGTCTTGCTGCTTTTGGGAGGACGTGATGTGCACGCAGGTGTGCCTGCTGTTGAACTACCATTTGATCAAAGTAACAGGGGTATGGGTGATACTCCGAAGCTTTCGAACCTTTCACGAAGAATAGCATCCTTGGTCAGATTCCGCGAGAAACGAAAGGAAAGATGTTTTGACAAGAAAATTAGGTATACTGTGAGAAAAGAGGTGGCACAGAGGATGCATAGGAAGAATGGGCAGTTTGCATCCTTGAAAGAAAGCCCAGGTTCATCTAACTGGGATTCTGCCCGGAGTTCTGCTCAAGATGGCACTTCTCATTCTGAATCTGTACGCAGATGTCACCATTGTGGTGTCACTGAAAATAATACTCCTGCAATGCGTCGGGGGCCAGCTGGACCAAGGACTTTATGTAATGCATGCGGCCTTATGTGGGCAAACAAGGGCACACTCAGAGATCTCAGCAAGGGAGGAAGAAATCTTTCTGTTGTTGAGCAAAGTGATCTGGATATTCCTATTGATGTCAAGCCTACTTCTGTTATTGAAAGAGAATTGTCCGGCATCCATGATGAGCAAGGTAGTTCTGAAGATCCGTCCAAGTCCAACACAGGTGATGGCTCTAGTGGTCATGCAGTAAACCCTAGTGATGAGGAATTGCCTGAAACTGCAGACCACTTTACGAATGCTCCGCCATTAGTAGGACTTGTTCATTCTTCAAGGAATGACACTGAACAGGAACCTCTGGTTGAACTTTCTAATCCTTCAGATACAGACATTGACATTCCAGGAAACTTTGATTAG 1056 0.4782 MASLNPQPLQFQHPAIPVGDDGDSDAADDDAMDELEDAHVTSLNVVANAASAYQEPLPAMPSRTSELTLSFEGEVYVFPAVTPQKVQAVLLLLGGRDVHAGVPAVELPFDQSNRGMGDTPKLSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESPGSSNWDSARSSAQDGTSHSESVRRCHHCGVTENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVVEQSDLDIPIDVKPTSVIERELSGIHDEQGSSEDPSKSNTGDGSSGHAVNPSDEELPETADHFTNAPPLVGLVHSSRNDTEQEPLVELSNPSDTDIDIPGNFD 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium168g00002 351 MobiDBLite consensus disorder prediction 323 337 - -
Vium168g00002 351 ProSitePatterns GATA-type zinc finger domain. 199 226 IPR000679 GO:0006355|GO:0043565
Vium168g00002 351 MobiDBLite consensus disorder prediction 169 192 - -
Vium168g00002 351 PANTHER GATA TRANSCRIPTION FACTOR 28 21 344 IPR045280 GO:0006355
Vium168g00002 351 MobiDBLite consensus disorder prediction 1 29 - -
Vium168g00002 351 Pfam CCT motif 128 169 IPR010402 GO:0005515
Vium168g00002 351 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 244 - -
Vium168g00002 351 ProSiteProfiles CCT domain profile. 128 170 IPR010402 GO:0005515
Vium168g00002 351 ProSiteProfiles GATA-type zinc finger domain profile. 193 252 IPR000679 GO:0006355|GO:0043565
Vium168g00002 351 Pfam tify domain 62 94 IPR010399 -
Vium168g00002 351 SMART GATA_3 193 246 IPR000679 GO:0006355|GO:0043565
Vium168g00002 351 Gene3D - 193 246 IPR013088 GO:0006355|GO:0008270
Vium168g00002 351 MobiDBLite consensus disorder prediction 271 351 - -
Vium168g00002 351 Pfam GATA zinc finger 199 235 IPR000679 GO:0006355|GO:0043565
Vium168g00002 351 SMART tify_2 60 95 IPR010399 -
Vium168g00002 351 CDD ZnF_GATA 198 242 IPR000679 GO:0006355|GO:0043565
Vium168g00002 351 MobiDBLite consensus disorder prediction 161 198 - -
Vium168g00002 351 ProSiteProfiles Tify domain profile. 60 95 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium168g00002 Vium-Chr168 9995 20411 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium168g00002 5 271 Tify Gene Family AT1G51600 44.792 1.06e-65 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium168g00002 CCT 1.3e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium168g00002 - - vun:114164157 624.78