Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1686g00008 ATGAGGCCCATATTCCATTGCCATTACCGACCTCACAACGCATCGCAACACCTTCAAATCCCCCTCTCCTATCTTTCGCCCCTCTTCGCAACCCATCCACAATCACAACCCTTTTCTCCTTTCTCTCTCTCTCTCTCTCTCTTTCTCCGATCGCAAAAACCTAACTCCGTTTTCTCTTCCTCCATGGCTCAGAAAACCGAGAACGAAGAAACCGAGTTCAAGGTTCCCGAAACCATTACTCTATGCGTCAACAACTGCGGGGTCACAGGGAACCCTGCCACCAACAACATGTGCCAGAACTGCTTCACCGCCTTCACAGCTTCCACCGCCACAACGTCATCCGCTACCGTGGCCACCGCCGGAGTCTCCTCCCCCTCCGCTAGATCCGGTGCGTCCGCGCGTCCTCAGAAGAGATCCTTCCCCGAAGAGCCTTCCTTGGCTGCAGATCCTCCCTCCTCCGACCAAAACACGCCGTCCGAGGCCAAGCGCGTCGTCAATCGCTGCTCCGGTTGCCGGCGAAAGGTCGGACTCACCGGATTCCGGTGCCGGTGTGGTGAACTCTTCTGCGCCGAGCATCGGTACTCCGATCGCCACGACTGCAGTTACGACTACAAAGCCGCCGGTAGAGAAGCCATCGCCAGGGAGAATCCGGTGGTTAGAGCCGCGAAGATCGTCAAAGTCTGA 684 0.5702 MRPIFHCHYRPHNASQHLQIPLSYLSPLFATHPQSQPFSPFSLSLSLFLRSQKPNSVFSSSMAQKTENEETEFKVPETITLCVNNCGVTGNPATNNMCQNCFTAFTASTATTSSATVATAGVSSPSARSGASARPQKRSFPEEPSLAADPPSSDQNTPSEAKRVVNRCSGCRRKVGLTGFRCRCGELFCAEHRYSDRHDCSYDYKAAGREAIARENPVVRAAKIVKV 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1686g00008 227 Pfam A20-like zinc finger 81 102 IPR002653 GO:0003677|GO:0008270
Vium1686g00008 227 Gene3D - 143 223 IPR035896 -
Vium1686g00008 227 ProSiteProfiles Zinc finger A20-type profile. 76 110 IPR002653 GO:0003677|GO:0008270
Vium1686g00008 227 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 81 116 - -
Vium1686g00008 227 ProSiteProfiles Zinc finger AN1-type profile. 162 208 IPR000058 GO:0008270
Vium1686g00008 227 SMART A20_3 79 103 IPR002653 GO:0003677|GO:0008270
Vium1686g00008 227 SMART AN1_Zf_4 168 205 IPR000058 GO:0008270
Vium1686g00008 227 FunFam Zinc finger A20 and AN1 domain-containing stress-associated protein 1 62 139 - -
Vium1686g00008 227 Pfam AN1-like Zinc finger 168 205 IPR000058 GO:0008270
Vium1686g00008 227 Gene3D - 60 129 - -
Vium1686g00008 227 PANTHER AN1-TYPE ZINC FINGER PROTEIN 79 226 - -
Vium1686g00008 227 MobiDBLite consensus disorder prediction 118 133 - -
Vium1686g00008 227 FunFam Zinc finger AN1-type containing 6 142 223 - -
Vium1686g00008 227 MobiDBLite consensus disorder prediction 118 160 - -
Vium1686g00008 227 SUPERFAMILY AN1-like Zinc finger 153 221 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1686g00008 Vium-Chr1686 134170 135227 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1686g00008 69 227 C2H2 Transcription Factor Family AT3G52800 39.306 8.26e-35 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1686g00008 - - vum:124827556 411.764