Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1686g00002 ATGGATAAGGGGGTGCCACCTAGCCTATTCGTCAATGATGGTTCTTTCATGGAGAGGTTCAAGCAACTTCAACAAGAGCAGGAGAAAGGGAAGAATGTCAAATTAGAGAATTCTAAACCAATTAAGGTTATTTCAGGGTCTTTGTCGCCCAATCCCTCCATTACCAAAACATCTGTGGACTCGAAGGTTAATGATACTAGGGGTGGTTCTGGTGGCAAACTAGCTTTCAGTTTAAAACAAAAGTCAAAGCTGGTACCACTCCCTGTTAAATTGAGTGCCGATGAAGATGAAGAAGAAACAGAAGCTGGGTATATTTCAAATGATGCACCACTAAAACGACAAAAGTTAGGCCAGGATGGCATTGACCAATCATCAAGACAACTTGATGTTGCACCTCCTTCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAACTAGCAAGTTTTGTGGCAAAAAATGGAAGGCAATTTGAGGATGTTACGCGACAAAAAAATCCAGGGGATACACCTTTCAAATTTTTATTTGATGAAAGATGTGCTGAATACAAGTACTATGAATATCAGCTTGCTCAAGAAGAAAAGGCTCTTGCACAGACAAGGGAATCACAGGTGCCTCGTAATGGGGGAACAAGTACTTCATCTTCCAAACCCACTAGTGGTCATCAAAGATCATCTCAGCAGCATACATCCTACCAAATTCCTGCATCTGCTTTATATGAAAGTGCGGACAATTCAAGAGCTTCTGGATCTTCAATTCAAACATCTCCACTAGGAATGAGTGAGCCCAGTGGTTCATCAAATGCTGATTCTTTGGCACTAATGGAGTTCTACATGAAGAAAGCTGCACGGGAAGAAAAGTATAAACAACCTAAGTATTCAAAAGATGAGATGCCCCCTCCTGCCTCTCTTCAAGGCAAAAAAGGCCATCACATGGGTGATTTCATACCTCCAGAAGAACTTGAGAAGTTCTTGGCCAGCTGTAATGATGCTGCAGCACAGAAAGCTGCAAAGGAGCATGTAGAGAGGTCTAAGATTCAGGCTGATAATGTAGGCCACAGGCTCCTGTCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGCGGATCCAGGAAGGGTATTTCAGATCCTATCATGGCAGGTAATATTAAGAAGAATAACTTGGGGGTTGGTGCTCAGGAACCAGGGGAGGTGACTTCAGAGGATGACATATATGAGCAGTACAAGAAGCGGATGATGCTTGGTTATCGTTACAGACCCAATCCTCTGAACAATCCTCGAAAAGCTTATTACTGA 1296 0.4298 MDKGVPPSLFVNDGSFMERFKQLQQEQEKGKNVKLENSKPIKVISGSLSPNPSITKTSVDSKVNDTRGGSGGKLAFSLKQKSKLVPLPVKLSADEDEEETEAGYISNDAPLKRQKLGQDGIDQSSRQLDVAPPSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDERCAEYKYYEYQLAQEEKALAQTRESQVPRNGGTSTSSSKPTSGHQRSSQQHTSYQIPASALYESADNSRASGSSIQTSPLGMSEPSGSSNADSLALMEFYMKKAAREEKYKQPKYSKDEMPPPASLQGKKGHHMGDFIPPEELEKFLASCNDAAAQKAAKEHVERSKIQADNVGHRLLSKMGWKEGEGLGGSRKGISDPIMAGNIKKNNLGVGAQEPGEVTSEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1686g00002 431 MobiDBLite consensus disorder prediction 118 132 - -
Vium1686g00002 431 SMART G-patch_5 346 393 IPR000467 GO:0003676
Vium1686g00002 431 ProSiteProfiles G-patch domain profile. 348 395 IPR000467 GO:0003676
Vium1686g00002 431 Gene3D Surp module 114 198 IPR035967 GO:0003723|GO:0006396
Vium1686g00002 431 MobiDBLite consensus disorder prediction 43 65 - -
Vium1686g00002 431 SMART surpneu2 141 195 IPR000061 GO:0003723|GO:0006396
Vium1686g00002 431 MobiDBLite consensus disorder prediction 286 308 - -
Vium1686g00002 431 SUPERFAMILY Surp module (SWAP domain) 127 193 IPR035967 GO:0003723|GO:0006396
Vium1686g00002 431 ProSiteProfiles SURP motif repeat profile. 143 186 IPR000061 GO:0003723|GO:0006396
Vium1686g00002 431 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 2 55 IPR040169 -
Vium1686g00002 431 MobiDBLite consensus disorder prediction 90 141 - -
Vium1686g00002 431 MobiDBLite consensus disorder prediction 43 74 - -
Vium1686g00002 431 Pfam Surp module 142 191 IPR000061 GO:0003723|GO:0006396
Vium1686g00002 431 MobiDBLite consensus disorder prediction 197 268 - -
Vium1686g00002 431 Pfam G-patch domain 349 392 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1686g00002 Vium-Chr1686 46980 52583 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1686g00002 293 404 C2H2 Transcription Factor Family AT5G26610 35.043 3.39e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1686g00002 K13096 - gmx:100786213 776.933